NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA544
Library SL
(Link to library)
Clone ID SLA544
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLA544Z
(Link to Original site)
Representative DNA sequence 
>SLA544 (SLA544Q) /CSM/SL/SLA5-B/SLA544Q.Seq.d/
XXXXXXXXXXAAATCGTCGATTAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGA
AGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATC
TCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAG
AGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGG
TAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATAT
TTCTTAATAAATAGCATTTTATAATAATTTT
sequence update 1997. 6.14
Translated Amino Acid sequence 
---SSIKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRD
MRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnf
Translated Amino Acid sequence (All Frames) 
Frame A:
---nrrlklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvlnpslnthh*vvspse
i*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*hfiii


Frame B:
---ivd*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*ilh*iptirsfrrqr
yetnrrrrchqinrqespr*sr**ercccpikkeink*yflinsil**f


Frame C:
---SSIKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRD
MRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA544 (SLA544Q) /CSM/SL/SLA5-B/SLA544Q.Seq.d/                        636   0.0
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        620   e-177
SLK554 (SLK554Q) /CSM/SL/SLK5-C/SLK554Q.Seq.d/                        620   e-177
SLK466 (SLK466Q) /CSM/SL/SLK4-C/SLK466Q.Seq.d/                        620   e-177
SLK447 (SLK447Q) /CSM/SL/SLK4-B/SLK447Q.Seq.d/                        620   e-177
SLG782 (SLG782Q) /CSM/SL/SLG7-D/SLG782Q.Seq.d/                        620   e-177
SLF323 (SLF323Q) /CSM/SL/SLF3-A/SLF323Q.Seq.d/                        620   e-177
SLE747 (SLE747Q) /CSM/SL/SLE7-B/SLE747Q.Seq.d/                        620   e-177
SLE701 (SLE701Q) /CSM/SL/SLE7-A/SLE701Q.Seq.d/                        620   e-177
SLE555 (SLE555Q) /CSM/SL/SLE5-C/SLE555Q.Seq.d/                        620   e-177
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052121) Dictyostelium discoideum slug cDNA, clone SLA544.      527   e-146  1
(X55973) D. discoideum EF1-I gene for elongation factor 1 al...   505   e-139  1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   505   e-139  1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   505   e-139  1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   505   e-139  1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   505   e-139  1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2...   505   e-139  1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0...   505   e-139  1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2...   505   e-139  1
(AU268657) Dictyostelium discoideum vegetative cDNA clone:VS...   505   e-139  1
dna update 2009. 1.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   134   7e-31
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   134   7e-31
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   134   7e-31
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B...    96   3e-19
AF398148_1(AF398148|pid:none) Brassica rapa subsp. pekinensis tr...    94   1e-18
AY445082_1(AY445082|pid:none) Metarhizium anisopliae strain E6 t...    93   2e-18
EF551322_1(EF551322|pid:none) Chara australis elongation factor ...    93   2e-18
(Q00251) RecName: Full=Elongation factor 1-alpha;          Short...    93   2e-18
AY048275_1(AY048275|pid:none) Arabidopsis thaliana At1g07930/T6D...    93   3e-18
AC026875_2(AC026875|pid:none) Genomic sequence for Arabidopsis t...    93   3e-18
protein update 2009. 5.31
PSORT 

 psg: 0.69  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLA544 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA544Z
3' end seq. 
>SLA544Z.Seq
----------AAATCGTCGATTAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGA
AGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATC
TCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAG
AGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGG
TAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATAT
TTCTTAATAAATAGCATTTTATAATAATTTT
Length of 3' end seq. 321
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -