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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA533
Library SL
(Link to library)
Clone ID SLA533
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1
Original site URL
Representative seq. ID SLA533F
(Link to Original site)
Representative DNA sequence 
>SLA533 (SLA533Q) /CSM/SL/SLA5-B/SLA533Q.Seq.d/
AAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAATAAAAAAAAAAAAAAAACCACTA
TCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAAAAAAATAAAAAAAAATAATAAT
AAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTTAAAAAAAAAATAAAAAATAATA
AAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCT
TCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAG
CTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATC
ACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAXXXXXXXXXX
sequence update 1999. 2.19
Translated Amino Acid sequence 
ki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdlekikkfkkkiknnk
k*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTNDAPQVSSGLIHH
IPMQLSQMYKQSLTK---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*kslkkk*kii
knkkkikkktfktllllfgasvklmlrclsppllcitllklr*srapltmllkypqg*si
tflcnslkcissl*q---


Frame B:
knlisfkmv*f**kkkknhyh***kknkk*kkkk*kkiiisytmglrenkkv*kknkk**
kikkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rcsssilrvnps
hsyatlsnv*avfnk---


Frame C:
ki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdlekikkfkkkiknnk
k*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSSTNDAPQVSSGLIHH
IPMQLSQMYKQSLTK---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        396   e-109
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        396   e-109
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        396   e-109
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        396   e-109
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        396   e-109
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        396   e-109
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        396   e-109
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        396   e-109
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        396   e-109
SSL753 (SSL753Q) /CSM/SS/SSL7-C/SSL753Q.Seq.d/                        396   e-109
own update 2004. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060184) Dictyostelium discoideum slug cDNA, clone SLA533.      396   e-133  3
(C91469) Dictyostelium discoideum slug cDNA, clone SSK317.        396   e-132  3
(AU037400) Dictyostelium discoideum slug cDNA, clone SSD587.      396   e-132  3
(AU075940) Dictyostelium discoideum slug cDNA, clone SSA167.      396   e-132  3
(C92697) Dictyostelium discoideum slug cDNA, clone SSF865.        396   e-132  3
(C92742) Dictyostelium discoideum slug cDNA, clone SSF180.        396   e-132  3
(C92529) Dictyostelium discoideum slug cDNA, clone SSE577.        396   e-132  3
(C93988) Dictyostelium discoideum slug cDNA, clone SSC892.        396   e-132  3
(C92070) Dictyostelium discoideum slug cDNA, clone SSC142.        396   e-132  3
(AU039010) Dictyostelium discoideum slug cDNA, clone SSM269.      396   e-132  3
dna update 2009. 1.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   8.6
protein update 2009. 1.19
PSORT 

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SLA533 is cyt
5' end seq. ID SLA533F
5' end seq. 
>SLA533F.Seq
AAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAATAAAAAAAAAAAAAAAACCACTA
TCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAAAAAAATAAAAAAAAATAATAAT
AAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTTAAAAAAAAAATAAAAAATAATA
AAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCT
TCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAG
CTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATC
ACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAA----------
Length of 5' end seq. 408
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -