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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA508
Library SL
(Link to library)
Clone ID SLA508
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11049-1
Original site URL
Representative seq. ID SLA508E
(Link to Original site)
Representative DNA sequence 
>SLA508 (SLA508Q) /CSM/SL/SLA5-A/SLA508Q.Seq.d/
CTGAATCACCCACTNCGCCACCGCTNCCATCAACTGTCGACACCGCCAAACCAGCCGCTA
AAAAAGAAACTACCACTACCACTGCCTCTGTTGAATGGACACCAGAAGNACAAAAACTCT
TGGAAGAAGCTTTACAAAAAGTCGATAAAAATGCTGAAGATCGTTGGGATCAAATCGCAG
CTCGTCTCGGTNCTAAATCTAAAAAAGATTGTGTTGCTCGTTTCAAATATTTAGCTACTA
TGGTTAAAAATATCCAACCAACTAAATAAGTTAAATATTAAAAAA
sequence update 1997. 6.21
Translated Amino Acid sequence 
ESPTXPPLPSTVDTAKPAAKKETTTTTASVEWTPEXQKLLEEALQKVDKNAEDRWDQIAA
RLGXKSKKDCVARFKYLATMVKNIQPTK*vky*k
Translated Amino Acid sequence (All Frames) 
Frame A:
lnhplrhrxhqlstppnqplkkklplplpllnghqkxknswkklykksikmlkivgiksq
lvsvlnlkkivllvsni*llwlkisnqlnklnikk


Frame B:
*ithxataxincrhrqtsr*krnyhyhclc*mdtrxtktlgrsftksr*kc*rslgsnrs
ssrx*i*krlccsfqifsyyg*kyptn*is*ilk


Frame C:
ESPTXPPLPSTVDTAKPAAKKETTTTTASVEWTPEXQKLLEEALQKVDKNAEDRWDQIAA
RLGXKSKKDCVARFKYLATMVKNIQPTK*vky*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA508 (SLA508Q) /CSM/SL/SLA5-A/SLA508Q.Seq.d/                        541   e-153
SLE172 (SLE172Q) /CSM/SL/SLE1-C/SLE172Q.Seq.d/                        509   e-144
AFN547 (AFN547Q) /CSM/AF/AFN5-B/AFN547Q.Seq.d/                        383   e-105
VHJ195 (VHJ195Q) /CSM/VH/VHJ1-D/VHJ195Q.Seq.d/                        367   e-101
SLD569 (SLD569Q) /CSM/SL/SLD5-C/SLD569Q.Seq.d/                        250   1e-65
SLD492 (SLD492Q) /CSM/SL/SLD4-D/SLD492Q.Seq.d/                         86   3e-16
SHC413 (SHC413Q) /CSM/SH/SHC4-A/SHC413Q.Seq.d/                         38   0.069
SFI478 (SFI478Q) /CSM/SF/SFI4-D/SFI478Q.Seq.d/                         38   0.069
CFK413 (CFK413Q) /CSM/CF/CFK4-A/CFK413Q.Seq.d/                         38   0.069
AHO276 (AHO276Q) /CSM/AH/AHO2-D/AHO276Q.Seq.d/                         38   0.069
own update 2004. 5.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C83939) Dictyostelium discoideum slug cDNA, clone SLA508.        541   e-150  1
(AU034677) Dictyostelium discoideum slug cDNA, clone SLE172.      502   e-138  1
(BJ345667) Dictyostelium discoideum cDNA clone:dda28m11, 3' ...   361   2e-98  2
(BJ442455) Dictyostelium discoideum cDNA clone:ddv49m23, 3' ...   359   4e-95  1
(AU052597) Dictyostelium discoideum slug cDNA, clone SLD569.      250   2e-62  1
(AU052538) Dictyostelium discoideum slug cDNA, clone SLD492.       78   2e-10  1
(DU286547) 1098448336907 CHORI-243 Ovis aries genomic clone ...    44   0.009  2
(BH765106) BMBAC353F10T7_PSU Brugia malayi Genomic Bac Libra...    48   0.17   1
(AC098579) Rattus norvegicus clone CH230-182C3, *** SEQUENCI...    32   0.37   2
(AC135098) Rattus norvegicus clone CH230-121H23, *** SEQUENC...    32   0.39   2
dna update 2009. 1.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q61712) RecName: Full=DnaJ homolog subfamily C member 1; AltNam...    61   1e-08
AF427142_1(AF427142|pid:none) Homo sapiens DnaJ-like protein mRN...    59   5e-08
BC139752_1(BC139752|pid:none) Homo sapiens DnaJ (Hsp40) homolog,...    59   5e-08
AY322164_1(AY322164|pid:none) Rattus norvegicus zuotin related f...    59   7e-08
(Q7TQ20) RecName: Full=DnaJ homolog subfamily C member 2; AltNam...    59   7e-08
(P54103) RecName: Full=DnaJ homolog subfamily C member 2; AltNam...    57   2e-07
BC125057_1(BC125057|pid:none) Homo sapiens DnaJ (Hsp40) homolog,...    56   3e-07
BC000859_1(BC000859|pid:none) Homo sapiens DnaJ (Hsp40) homolog,...    56   3e-07
(Q1RMH9) RecName: Full=DnaJ homolog subfamily C member 2; AltNam...    56   3e-07
(Q99543) RecName: Full=DnaJ homolog subfamily C member 2; AltNam...    56   3e-07
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLA508 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA508E
Full length Seq. 
>SLA508E.Seq
CTGAATCACCCACTNCGCCACCGCTNCCATCAACTGTCGACACCGCCAAACCAGCCGCTA
AAAAAGAAACTACCACTACCACTGCCTCTGTTGAATGGACACCAGAAGNACAAAAACTCT
TGGAAGAAGCTTTACAAAAAGTCGATAAAAATGCTGAAGATCGTTGGGATCAAATCGCAG
CTCGTCTCGGTNCTAAATCTAAAAAAGATTGTGTTGCTCGTTTCAAATATTTAGCTACTA
TGGTTAAAAATATCCAACCAACTAAATAAGTTAAATATTAAAAAA
Length of full length seq. 285