NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA477
Library SL
(Link to library)
Clone ID SLA477
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLA477Z
(Link to Original site)
Representative DNA sequence 
>SLA477 (SLA477Q) /CSM/SL/SLA4-D/SLA477Q.Seq.d/
XXXXXXXXXXAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAAC
TGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAA
CATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGT
TGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCC
AAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGA
AGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAA
TTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAAT
GTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTA
GATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTT
TTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTATAA
sequence update 1997. 6.16
Translated Amino Acid sequence 
---NKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVA
IDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNED
NKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*i
ygskmnrrmfgsi**pemffy*knknknnnf*ly
Translated Amino Acid sequence (All Frames) 
Frame A:
---ktrvltlkvvihillklvqhvysinlilvqplkvmltllpvqrfh*rmvlnmvqyll
qlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmk
iiklnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalihlpr
fmvpk*igecldlssnlkcfsikkikikiiisnci


Frame B:
---kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*hycrfrdfirewcstwssicc
n*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r
**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcld
lwfqne*envwiylvt*nvfllkk*k*k**fliv*


Frame C:
---NKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVA
IDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNED
NKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*i
ygskmnrrmfgsi**pemffy*knknknnnf*ly
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1185   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1185   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1185   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1185   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1185   0.0
SLG775 (SLG775Q) /CSM/SL/SLG7-D/SLG775Q.Seq.d/                       1185   0.0
SLB708 (SLB708Q) /CSM/SL/SLB7-A/SLB708Q.Seq.d/                       1185   0.0
SLA477 (SLA477Q) /CSM/SL/SLA4-D/SLA477Q.Seq.d/                       1185   0.0
SSC639 (SSC639Q) /CSM/SS/SSC6-B/SSC639Q.Seq.d/                       1183   0.0
SSA431 (SSA431Q) /CSM/SS/SSA4-B/SSA431Q.Seq.d/                       1181   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1185   0.0    2
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.     1185   0.0    2
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.     1185   0.0    2
(AU033994) Dictyostelium discoideum slug cDNA, clone SLB708.     1185   0.0    2
(C94406) Dictyostelium discoideum slug cDNA, clone SSK657.       1185   0.0    1
(C93761) Dictyostelium discoideum slug cDNA, clone SSL687.       1185   0.0    2
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.       1185   0.0    2
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.       1185   0.0    1
(C89771) Dictyostelium discoideum slug cDNA, clone SSG787.       1185   0.0    1
(C91974) Dictyostelium discoideum slug cDNA, clone SSC639.       1183   0.0    1
dna update 2009. 1.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   346   3e-94
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   182   7e-45
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   182   7e-45
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   167   2e-40
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   166   4e-40
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   166   5e-40
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   164   2e-39
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   163   4e-39
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   163   4e-39
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   162   1e-38
protein update 2009. 5.31
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLA477 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA477Z
3' end seq. 
>SLA477Z.Seq
----------AAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAAC
TGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAA
CATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGT
TGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCC
AAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGA
AGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAA
TTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAAT
GTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTA
GATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTT
TTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTATAA
Length of 3' end seq. 638
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -