>SLA476 (SLA476Q) /CSM/SL/SLA4-D/SLA476Q.Seq.d/
XXXXXXXXXXTTAGTCGATATGCAAGTTCTCATCAAGGTTCAAGGTAAATGTACCACCGA
TCACATCTCTATGGCTGGTCCATGGTTGAAATACAGAGGTCATTTGGATAACATTTCCAA
CAATATGTTAATTGGTGCTATCAACTCTGAAAACGGTAAAGCCAACGCTGTTCTCAATCA
ATTCACTGGTGAAATCGGTCCAGTCCCAACCGTCGCTCGTGACTACAAGAAACGTGGTGT
CAATTGGATCGTCGTTGGTGATGAAAACTATGGTGAAGGCTCATCTCGTGAACATGCTGC
CCTCGAACCACGTCATCTCGGTGGTAAAGCTATCCTCGTTAAATCATTTGCTCGTATCCA
CGAAACCAATCTCAAGAAACAAGGTATCTTACCATTAACCTTTGCTAACCCATCTGATTA
CGATAAAATCTCTGGTGACGATCGTATTTCAATCATTGGTCTCAAAGATCTTGCCCCAGG
TAAACAACTCACTCTCATTGTTAAATCTGCTAAACAAGGTTCTGAATTTGAAATTAAAGC
TAATCACACCATGAATGCTGGTCAAATCGAATGGTTCAAAGCTGGTTCCGCTTTAAATTA
TATTAAATCAGAAAAAGCCAAAAAAAATTAAATTTTAATTAAAAAAAAAAAAGGTGTTTT
TATAAAAATTAA

---VDMQVLIKVQGKCTTDHISMAGPWLKYRGHLDNISNNMLIGAINSENGKANAVLNQF
TGEIGPVPTVARDYKKRGVNWIVVGDENYGEGSSREHAALEPRHLGGKAILVKSFARIHE
TNLKKQGILPLTFANPSDYDKISGDDRISIIGLKDLAPGKQLTLIVKSAKQGSEFEIKAN
HTMNAGQIEWFKAGSALNYIKSEKAKKN*ilikkkkgvfiki

Frame A:
---*sickfssrfkvnvppitslwlvhg*nteviwitfptic*lvlstlktvkptlfsin
slvksvqsqpslvttrnvvsigsslvmktmvkahlvnmlpsnhvisvvklsslnhllvst
kpisrnkvsyh*pllthlitikslvtivfqslvskilpqvnnslsllnllnkvlnlklkl
itp*mlvksngsklvpl*iilnqkkpkkikf*lkkkkvfl*kl


Frame B:
---sryasshqgsr*myhrshlygwsmveiqrsfg*hfqqyvnwcyql*kr*sqrcsqsi
hw*nrsspnrrs*lqetwcqldrrw**klw*rlis*tccprttssrw*sypr*iicsypr
nqsqetryltinlc*pi*lr*nlw*rsyfnhwsqrscpr*tthshc*ic*trf*i*n*s*
shhecwsnrmvqswfrfkly*irksqkklnfn*kkkrcfykn*


Frame C:
---VDMQVLIKVQGKCTTDHISMAGPWLKYRGHLDNISNNMLIGAINSENGKANAVLNQF
TGEIGPVPTVARDYKKRGVNWIVVGDENYGEGSSREHAALEPRHLGGKAILVKSFARIHE
TNLKKQGILPLTFANPSDYDKISGDDRISIIGLKDLAPGKQLTLIVKSAKQGSEFEIKAN
HTMNAGQIEWFKAGSALNYIKSEKAKKN*ilikkkkgvfiki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA476 (SLA476Q) /CSM/SL/SLA4-D/SLA476Q.Seq.d/                       1191   0.0
VHJ814 (VHJ814Q) /CSM/VH/VHJ8-A/VHJ814Q.Seq.d/                       1183   0.0
VHO133 (VHO133Q) /CSM/VH/VHO1-B/VHO133Q.Seq.d/                       1168   0.0
VHJ504 (VHJ504Q) /CSM/VH/VHJ5-A/VHJ504Q.Seq.d/                       1168   0.0
VHC367 (VHC367Q) /CSM/VH/VHC3-C/VHC367Q.Seq.d/                       1168   0.0
VHJ867 (VHJ867Q) /CSM/VH/VHJ8-C/VHJ867Q.Seq.d/                       1144   0.0
VHD386 (VHD386Q) /CSM/VH/VHD3-D/VHD386Q.Seq.d/                       1138   0.0
SLG678 (SLG678Q) /CSM/SL/SLG6-D/SLG678Q.Seq.d/                       1138   0.0
VHF201 (VHF201Q) /CSM/VH/VHF2-A/VHF201Q.Seq.d/                       1116   0.0
CHQ607 (CHQ607Q) /CSM/CH/CHQ6-A/CHQ607Q.Seq.d/                       1112   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C25574) Dictyostelium discoideum slug cDNA, clone SLA476.       1154   0.0    1
(BJ442525) Dictyostelium discoideum cDNA clone:ddv50l04, 3' ...  1146   0.0    1
(BJ437847) Dictyostelium discoideum cDNA clone:ddv35f17, 3' ...  1126   0.0    1
(BJ442499) Dictyostelium discoideum cDNA clone:ddv50g01, 3' ...  1104   0.0    2
(BJ438430) Dictyostelium discoideum cDNA clone:ddv37l21, 3' ...  1104   0.0    1
(AU039889) Dictyostelium discoideum slug cDNA, clone SLG678.     1100   0.0    1
(BJ445359) Dictyostelium discoideum cDNA clone:ddv59a09, 3' ...  1078   0.0    2
(BJ442653) Dictyostelium discoideum cDNA clone:ddv50f18, 3' ...  1011   0.0    3
(BJ385501) Dictyostelium discoideum cDNA clone:ddc55m02, 3' ...  1033   0.0    2
(BJ439599) Dictyostelium discoideum cDNA clone:ddv41a02, 3' ...  1053   0.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB105050_1(AB105050|pid:none) Antheraea yamamai mRNA for hypothe...   298   1e-79
Z49931_1(Z49931|pid:none) B.taurus mRNA for mitochondrial aconit...   296   3e-79
DQ468384_1(DQ468384|pid:none) Bos taurus BTA05 5597 genomic sequ...   296   3e-79
BC102642_1(BC102642|pid:none) Bos taurus aconitase 2, mitochondr...   296   3e-79
(P20004) RecName: Full=Aconitate hydratase, mitochondrial;      ...   296   3e-79
L25599_7(L25599|pid:none) Caenorhabditis elegans cosmid F54H12, ...   296   5e-79
L25599_8(L25599|pid:none) Caenorhabditis elegans cosmid F54H12, ...   296   5e-79
S44831(S44831)F54H12.1 protein - Caenorhabditis elegans               296   5e-79
(Q99KI0) RecName: Full=Aconitate hydratase, mitochondrial;      ...   295   8e-79
AK144207_1(AK144207|pid:none) Mus musculus kidney CCL-142 RAG cD...   295   8e-79

 psg: 0.61  gvh: 0.41  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial

>> prediction for SLA476 is nuc

>SLA476Z.Seq
----------TTAGTCGATATGCAAGTTCTCATCAAGGTTCAAGGTAAATGTACCACCGA
TCACATCTCTATGGCTGGTCCATGGTTGAAATACAGAGGTCATTTGGATAACATTTCCAA
CAATATGTTAATTGGTGCTATCAACTCTGAAAACGGTAAAGCCAACGCTGTTCTCAATCA
ATTCACTGGTGAAATCGGTCCAGTCCCAACCGTCGCTCGTGACTACAAGAAACGTGGTGT
CAATTGGATCGTCGTTGGTGATGAAAACTATGGTGAAGGCTCATCTCGTGAACATGCTGC
CCTCGAACCACGTCATCTCGGTGGTAAAGCTATCCTCGTTAAATCATTTGCTCGTATCCA
CGAAACCAATCTCAAGAAACAAGGTATCTTACCATTAACCTTTGCTAACCCATCTGATTA
CGATAAAATCTCTGGTGACGATCGTATTTCAATCATTGGTCTCAAAGATCTTGCCCCAGG
TAAACAACTCACTCTCATTGTTAAATCTGCTAAACAAGGTTCTGAATTTGAAATTAAAGC
TAATCACACCATGAATGCTGGTCAAATCGAATGGTTCAAAGCTGGTTCCGCTTTAAATTA
TATTAAATCAGAAAAAGCCAAAAAAAATTAAATTTTAATTAAAAAAAAAAAAGGTGTTTT
TATAAAAATTAA