SLA466
Library SL
(Link to library)
Clone ID SLA466
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16264-1
Original site URL
Representative seq. ID SLA466P
(Link to Original site)
Representative DNA sequence
>SLA466 (SLA466Q) /CSM/SL/SLA4-C/SLA466Q.Seq.d/
ATCAAATGTCACCAATTTAGAGTTACTTAAACGTCATTACAATAGTTTGGAAAGAATGAT
GGAAACTCGTATCTTTAGAGAGAAAGCCGATGACCAAACCAAAAAGGTTATCTATGATGT
CAAGAACATTTTGGCAGATCTAATCCTCATGGTTGAAACTCGTAAAACCGATGAACAATT
CCTCAGATTTTTCAAAGATGCCAAGCTATTCTCTGGCGATCTCTCCAATGATAATGAGCT
TAAGGTCCTCTTGGAAGACTGGAAGACCACCATTGTCAAGATGGCAACGGGTACAGAGGG
ACGTGGTATCGTTCGTTCCACCACCCAAGTTGTGACTGATCTTAAAGGTAGTGAATCTAT
ATTCAGATTCCTTTCAGAGGCAAGTAAATTCCTTCAAATGATAGTTTTGGATAAAAACTC
TCAATTTGTTGATGAGCAAAGAGAGATTGTATTTGATAATTTCTATAAAGTATTTAGAGT
ATTATCATCAAGTCCAGCATGGAATGATTTCGTATTGAATAGTAAATCATTGTCACGTGA
AGTTAAAGCAACTGGAGAAGTTGATCAAAACATGCCGCTAGTAAATTAAATACCATCAAA
TCCAATGATAATTTCAATTCAATGTTTTCAAATTTCAAGTTTTAATTCAATCATTTATCA
AAGATAAATCAGTGGCCGATGTCGATAAGGTATTCGAGTATGXXXXXXXXXXCTTCAATT
CGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAAAAATTCAATTTCCCAAAAATTCGT
GATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGCTCGTGTTGGTGTTGAGGTT
AGAATCTTGAAAGATGGACTTCAAAGAAAAACTCAAATCTTGGATTCCTATTGTATTTTG
GATAATCTATCAATTCATCTCTATGATTGTAAACATACTTTCCTCTATAAAATCTTTACA
AATCTCCTTAAAAAGAAATTAAAATTCGAGGTTGAAAAAGCAATCGCTCAACAAGTCGCA
AAGATGGTTGCTGAAACAGATTACAAAATGGTCGGTAAATATCATGTTGCTAAACAAAAT
CGTCTACGTATGAAGGCTAAACTCAATTCACGTGTCTCTGAAATCAAACAAAAGATGGCT
CAAAAAAAAAAAAAAAAAC
sequence update 1999. 2.19
Translated Amino Acid sequence
qmspi*sylnvitivwke*wklvslerkpmtkpkrlsmmsrtfwqi*sswlklvkpmnns
sdfskmpsyslaispmimslrsswktgrpplsrwqrvqrdvvsfvpppkl*lilkvvnly
sdsfqrqvnsfk**fwiktlnllmskerlyliisikyleyyhqvqhgmisy*ivnhchvk
lkqlekliktcr**ikyhqiq**FQFNVFKFQVLIQSFIKDKSVADVDKVFEY---

---SIRARINALPWEFEKFNFPKIRDRGLANILVDGRGARVGVEVRILKDGLQRKTQILD
SYCILDNLSIHLYDCKHTFLYKIFTNLLKKKLKFEVEKAIAQQVAKMVAETDYKMVGKYH
VAKQNRLRMKAKLNSRVSEIKQKMAQKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
ikchqfrvt*tslq*fgkndgnsyl*resr*pnqkgyl*cqehfgrsnphg*ns*nr*ti
pqifqrcqailwrslq***a*gplgrledhhcqdgngyrgtwyrsfhhpscd*s*r**iy
iqipfrgk*ipsndsfg*klsic**akrdci**fl*si*siiikssme*frie**iivt*
s*snwrs*skhaasklntiksndnfnsmfsnfkf*fnhlskinqwpmsiryssm---

---lqfvlvsmlyhgslknsisqkfviev*qif*smvevlvlvlrles*kmdfkeklksw
ipivfwiiyqfismivnilssikslqislkrn*nsrlkkqslnksqrwllkqitkwsvni
mllnkivyv*rlnsihvslksnkrwlkkkkkn

Frame B:
snvtnlellkrhynslermmetrifrekaddqtkkviydvkniladlilmvetrktdeqf
lrffkdaklfsgdlsndnelkvlledwkttivkmatgtegrgivrsttqvvtdlkgsesi
frflseaskflqmivldknsqfvdeqreivfdnfykvfrvlssspawndfvlnskslsre
vkatgevdqnmplvn*ipsnpmiisiqcfqissfnsiiyqr*isgrcr*girv---

---fnscsyqcftmgv*kiqfpkns**rfskyfsrw*rcscwc*g*nlerwtskknsnlg
fllyfg*sinssl*l*tyfpl*nlyksp*keikirg*ksnrstsrkdgc*nrlqngr*is
cc*tksstyeg*tqftcl*nqtkdgskkkkk

Frame C:
qmspi*sylnvitivwke*wklvslerkpmtkpkrlsmmsrtfwqi*sswlklvkpmnns
sdfskmpsyslaispmimslrsswktgrpplsrwqrvqrdvvsfvpppkl*lilkvvnly
sdsfqrqvnsfk**fwiktlnllmskerlyliisikyleyyhqvqhgmisy*ivnhchvk
lkqlekliktcr**ikyhqiq**FQFNVFKFQVLIQSFIKDKSVADVDKVFEY---

---SIRARINALPWEFEKFNFPKIRDRGLANILVDGRGARVGVEVRILKDGLQRKTQILD
SYCILDNLSIHLYDCKHTFLYKIFTNLLKKKLKFEVEKAIAQQVAKMVAETDYKMVGKYH
VAKQNRLRMKAKLNSRVSEIKQKMAQKKKKK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA466 (SLA466Q) /CSM/SL/SLA4-C/SLA466Q.Seq.d/ 2202 0.0
CFF425 (CFF425Q) /CSM/CF/CFF4-B/CFF425Q.Seq.d/ 1110 0.0
CFG109 (CFG109Q) /CSM/CF/CFG1-A/CFG109Q.Seq.d/ 1102 0.0
CFG258 (CFG258Q) /CSM/CF/CFG2-C/CFG258Q.Seq.d/ 1061 0.0
CFB639 (CFB639Q) /CSM/CF/CFB6-B/CFB639Q.Seq.d/ 999 0.0
CHB846 (CHB846Q) /CSM/CH/CHB8-B/CHB846Q.Seq.d/ 940 0.0
CFA632 (CFA632Q) /CSM/CF/CFA6-B/CFA632Q.Seq.d/ 938 0.0
CHN630 (CHN630Q) /CSM/CH/CHN6-B/CHN630Q.Seq.d/ 866 0.0
CHR392 (CHR392Q) /CSM/CH/CHR3-D/CHR392Q.Seq.d/ 842 0.0
CHP215 (CHP215Q) /CSM/CH/CHP2-A/CHP215Q.Seq.d/ 842 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU060158) Dictyostelium discoideum slug cDNA, clone SLA466. 1390 0.0 1
(BJ358758) Dictyostelium discoideum cDNA clone:ddc11b08, 5' ... 1096 0.0 2
(BJ359134) Dictyostelium discoideum cDNA clone:ddc13a03, 5' ... 1088 0.0 1
(BJ359239) Dictyostelium discoideum cDNA clone:ddc13c16, 5' ... 1055 0.0 1
(BJ360124) Dictyostelium discoideum cDNA clone:ddc4m10, 5' e... 737 0.0 4
(BJ359775) Dictyostelium discoideum cDNA clone:ddc2o08, 5' e... 938 0.0 1
(BJ363170) Dictyostelium discoideum cDNA clone:ddc25l12, 5' ... 743 0.0 4
(BJ369118) Dictyostelium discoideum cDNA clone:ddc49k08, 5' ... 866 0.0 1
(C25571) Dictyostelium discoideum slug cDNA, clone SLA466. 850 0.0 1
(BJ386001) Dictyostelium discoideum cDNA clone:ddc56h23, 3' ... 842 0.0 1
dna update 2009. 1.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017345_410(AE017345|pid:none) Cryptococcus neoformans var. neo... 41 0.089
AM269976_20(AM269976|pid:none) Aspergillus niger contig An01c029... 36 2.2
AF395110_1(AF395110|pid:none) Naegleria gruberi RNA polymerase I... 36 2.2
EF420156_1(EF420156|pid:none) Tanapox virus isolate TPV-Kenya, c... 35 3.7
AF093542_1(AF093542|pid:none) Mus musculus transforming acidic c... 35 6.3
AM295250_2052(AM295250|pid:none) Staphylococcus carnosus subsp. ... 35 6.3
AK145556_1(AK145556|pid:none) Mus musculus blastocyst blastocyst... 35 6.3
(Q9JJ11) RecName: Full=Transforming acidic coiled-coil-containin... 35 6.3
BC003252_1(BC003252|pid:none) Mus musculus transforming, acidic ... 35 6.3
AF247674_1(AF247674|pid:none) Mus musculus ERIC1 (Eric1) mRNA, c... 35 6.3
protein update 2009. 5.31
PSORT

psg: 0.84 gvh: 0.37 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
20.0 %: mitochondrial
12.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for SLA466 is nuc

5' end seq. ID SLA466F
5' end seq.
>SLA466F.Seq
ATCAAATGTCACCAATTTAGAGTTACTTAAACGTCATTACAATAGTTTGGAAAGAATGAT
GGAAACTCGTATCTTTAGAGAGAAAGCCGATGACCAAACCAAAAAGGTTATCTATGATGT
CAAGAACATTTTGGCAGATCTAATCCTCATGGTTGAAACTCGTAAAACCGATGAACAATT
CCTCAGATTTTTCAAAGATGCCAAGCTATTCTCTGGCGATCTCTCCAATGATAATGAGCT
TAAGGTCCTCTTGGAAGACTGGAAGACCACCATTGTCAAGATGGCAACGGGTACAGAGGG
ACGTGGTATCGTTCGTTCCACCACCCAAGTTGTGACTGATCTTAAAGGTAGTGAATCTAT
ATTCAGATTCCTTTCAGAGGCAAGTAAATTCCTTCAAATGATAGTTTTGGATAAAAACTC
TCAATTTGTTGATGAGCAAAGAGAGATTGTATTTGATAATTTCTATAAAGTATTTAGAGT
ATTATCATCAAGTCCAGCATGGAATGATTTCGTATTGAATAGTAAATCATTGTCACGTGA
AGTTAAAGCAACTGGAGAAGTTGATCAAAACATGCCGCTAGTAAATTAAATACCATCAAA
TCCAATGATAATTTCAATTCAATGTTTTCAAATTTCAAGTTTTAATTCAATCATTTATCA
AAGATAAATCAGTGGCCGATGTCGATAAGGTATTCGAGTATG----------
Length of 5' end seq. 702
3' end seq. ID SLA466Z
3' end seq.
>SLA466Z.Seq
----------CTTCAATTCGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAAAAATTC
AATTTCCCAAAAATTCGTGATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGCT
CGTGTTGGTGTTGAGGTTAGAATCTTGAAAGATGGACTTCAAAGAAAAACTCAAATCTTG
GATTCCTATTGTATTTTGGATAATCTATCAATTCATCTCTATGATTGTAAACATACTTTC
CTCTATAAAATCTTTACAAATCTCCTTAAAAAGAAATTAAAATTCGAGGTTGAAAAAGCA
ATCGCTCAACAAGTCGCAAAGATGGTTGCTGAAACAGATTACAAAATGGTCGGTAAATAT
CATGTTGCTAAACAAAATCGTCTACGTATGAAGGCTAAACTCAATTCACGTGTCTCTGAA
ATCAAACAAAAGATGGCTCAAAAAAAAAAAAAAAAAC
Length of 3' end seq. 447
Connected seq. ID SLA466P
Connected seq.
>SLA466P.Seq
ATCAAATGTCACCAATTTAGAGTTACTTAAACGTCATTACAATAGTTTGGAAAGAATGAT
GGAAACTCGTATCTTTAGAGAGAAAGCCGATGACCAAACCAAAAAGGTTATCTATGATGT
CAAGAACATTTTGGCAGATCTAATCCTCATGGTTGAAACTCGTAAAACCGATGAACAATT
CCTCAGATTTTTCAAAGATGCCAAGCTATTCTCTGGCGATCTCTCCAATGATAATGAGCT
TAAGGTCCTCTTGGAAGACTGGAAGACCACCATTGTCAAGATGGCAACGGGTACAGAGGG
ACGTGGTATCGTTCGTTCCACCACCCAAGTTGTGACTGATCTTAAAGGTAGTGAATCTAT
ATTCAGATTCCTTTCAGAGGCAAGTAAATTCCTTCAAATGATAGTTTTGGATAAAAACTC
TCAATTTGTTGATGAGCAAAGAGAGATTGTATTTGATAATTTCTATAAAGTATTTAGAGT
ATTATCATCAAGTCCAGCATGGAATGATTTCGTATTGAATAGTAAATCATTGTCACGTGA
AGTTAAAGCAACTGGAGAAGTTGATCAAAACATGCCGCTAGTAAATTAAATACCATCAAA
TCCAATGATAATTTCAATTCAATGTTTTCAAATTTCAAGTTTTAATTCAATCATTTATCA
AAGATAAATCAGTGGCCGATGTCGATAAGGTATTCGAGTATG----------CTTCAATT
CGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAAAAATTCAATTTCCCAAAAATTCGT
GATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGCTCGTGTTGGTGTTGAGGTT
AGAATCTTGAAAGATGGACTTCAAAGAAAAACTCAAATCTTGGATTCCTATTGTATTTTG
GATAATCTATCAATTCATCTCTATGATTGTAAACATACTTTCCTCTATAAAATCTTTACA
AATCTCCTTAAAAAGAAATTAAAATTCGAGGTTGAAAAAGCAATCGCTCAACAAGTCGCA
AAGATGGTTGCTGAAACAGATTACAAAATGGTCGGTAAATATCATGTTGCTAAACAAAAT
CGTCTACGTATGAAGGCTAAACTCAATTCACGTGTCTCTGAAATCAAACAAAAGATGGCT
CAAAAAAAAAAAAAAAAAC
Length of connected seq. 1149
Full length Seq ID -
Full length Seq. -
Length of full length seq. -