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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA431
Library SL
(Link to library)
Clone ID SLA431
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12362-1
Original site URL
Representative seq. ID SLA431F
(Link to Original site)
Representative DNA sequence 
>SLA431 (SLA431Q) /CSM/SL/SLA4-B/SLA431Q.Seq.d/
GACAATCACAATTTTTTTTTTAAATTTCAATTAGAAACAAAAAATATATATAAAAAAAAG
AGATAAAAATGTTGAATGAAGAATTATTACCAATTTGGTTAGATCACGACTGCGGACATG
ATGATGCGTTTGCCATGTTATTAGCATTTCATTCAAAAATATTTAATATTTTAGGTATTT
CAAGTGTTCATGGTAATCAAACAGTTGATAAGACTACCATTAATGCATTGATAACATTGG
AAATCATTGGTAAATCAAATTGTGGTTATGAAGTTGTCAAAGGTGTTAGATCACCAATGT
GTAGACCTGAACAAGTATGTTCTGAAATTCATGGTGAAACAGGATTAGATTGTCCAACTG
CTGAATTACCAAAACCAACCCAACTACCAATTACAGATAGACCTGCAATTCAAGTTATGT
TTGAAAAGATATCAAAATTCTATACTGATAATCAACAAAAACAAAAAGTTATAATCGTTG
CAACAGGTTCATTAACAAATGTTGCCTTGCTATTCGCAGTTTACCCACAAATAAAACCAA
TGGTAGAAGTCTCATTATTGGGTGGCTCAATTAATTTTGGTAATATCTCACCAGCTGCAG
AGTATAACATTTTAGTGGATCCTGAAGCTGCAAAAGTGGTTTXXXXXXXXXX
sequence update 1999. 2.19
Translated Amino Acid sequence 
qsqfff*isirnkkyi*KKEIKMLNEELLPIWLDHDCGHDDAFAMLLAFHSKIFNILGIS
SVHGNQTVDKTTINALITLEIIGKSNCGYEVVKGVRSPMCRPEQVCSEIHGETGLDCPTA
ELPKPTQLPITDRPAIQVMFEKISKFYTDNQQKQKVIIVATGSLTNVALLFAVYPQIKPM
VEVSLLGGSINFGNISPAAEYNILVDPEAAKVV---
Translated Amino Acid sequence (All Frames) 
Frame A:
dnhnfffkfqletkniykkkr*kc*mknyyqfg*ittadmmmrlpcy*hfiqkylif*vf
qvfmvikqlirlplmh**hwkslvnqivvmklskvldhqcvdlnkyvlkfmvkqd*ivql
lnyqnqpnyqlqidlqfklclkryqnsiliinknkkl*slqqvh*qmlpcysqfthk*nq
w*kshywvaqlilvishqlqsitf*wilklqkw---


Frame B:
titifflnfn*kqkiyikkrdknve*riitnlvrsrlrt**cvchvisisfkni*yfryf
kcsw*sns**dyh*cidnignhw*iklwl*scqrc*itnv*t*tsmf*nsw*nrirlsnc
*itktnpttnyr*tcnssyv*kdikily**stktksynrcnrfinkcclairslptnktn
grsliigwln*fw*yltscrv*hfsgs*scksg---


Frame C:
qsqfff*isirnkkyi*KKEIKMLNEELLPIWLDHDCGHDDAFAMLLAFHSKIFNILGIS
SVHGNQTVDKTTINALITLEIIGKSNCGYEVVKGVRSPMCRPEQVCSEIHGETGLDCPTA
ELPKPTQLPITDRPAIQVMFEKISKFYTDNQQKQKVIIVATGSLTNVALLFAVYPQIKPM
VEVSLLGGSINFGNISPAAEYNILVDPEAAKVV---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN562 (VFN562Q) /CSM/VF/VFN5-C/VFN562Q.Seq.d/                       1156   0.0
SLA431 (SLA431Q) /CSM/SL/SLA4-B/SLA431Q.Seq.d/                       1156   0.0
VSK241 (VSK241Q) /CSM/VS/VSK2-B/VSK241Q.Seq.d/                         38   0.16
VSH181 (VSH181Q) /CSM/VS/VSH1-D/VSH181Q.Seq.d/                         38   0.16
VHP812 (VHP812Q) /CSM/VH/VHP8-A/VHP812Q.Seq.d/                         38   0.16
VHM532 (VHM532Q) /CSM/VH/VHM5-B/VHM532Q.Seq.d/                         38   0.16
VHF511 (VHF511Q) /CSM/VH/VHF5-A/VHF511Q.Seq.d/                         38   0.16
VHF380 (VHF380Q) /CSM/VH/VHF3-D/VHF380Q.Seq.d/                         38   0.16
SHJ766 (SHJ766Q) /CSM/SH/SHJ7-C/SHJ766Q.Seq.d/                         38   0.16
FC-BA13 (FC-BA13Q) /CSM/FC/FC-BA/FC-BA13Q.Seq.d/                       38   0.16
own update 2003.10.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...  1136   0.0    1
(AU060146) Dictyostelium discoideum slug cDNA, clone SLA431.     1136   0.0    2
(BJ417744) Dictyostelium discoideum cDNA clone:ddv28k15, 5' ...  1136   0.0    1
(EJ370402) 1092963722521 Global-Ocean-Sampling_GS-28-01-01-1...    52   0.026  1
(DX545971) GH_MBb0073J16f GH_MBb Gossypium hirsutum genomic ...    38   0.050  3
(ER622167) 1093017445951 Global-Ocean-Sampling_GS-36-01-01-2...    50   0.10   1
(BQ625429) rd14f10.y1 Meloidogyne incognita egg SL1 TOPO v1 ...    50   0.10   1
(AW871346) ra76b02.y1 Bird-Rao Meloidogyne incognita J2 Melo...    50   0.10   1
(AW830042) ra48h09.y1 Bird-Rao Meloidogyne incognita J2 Melo...    50   0.10   1
(AW828941) ra70a02.y1 Bird-Rao Meloidogyne incognita J2 Melo...    50   0.10   1
dna update 2009. 1.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7KWM9) RecName: Full=Inosine-uridine-preferring nucleoside hyd...   385   e-106
AM270407_14(AM270407|pid:none) Aspergillus niger contig An18c015...   140   2e-32
FM992689_672(FM992689|pid:none) Candida dubliniensis CD36 chromo...   133   4e-30
AP007150_333(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...   132   1e-29
CP000851_1857(CP000851|pid:none) Shewanella pealeana ATCC 700345...   131   2e-29
CP000606_696(CP000606|pid:none) Shewanella loihica PV-4, complet...   130   4e-29
AY603363_1(AY603363|pid:none) Corynebacterium ammoniagenes strai...   129   7e-29
CP000821_1047(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...   129   7e-29
CP000644_2693(CP000644|pid:none) Aeromonas salmonicida subsp. sa...   129   7e-29
CP000462_1422(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...   129   9e-29
protein update 2009. 5.31
PSORT 

 psg: 0.76  gvh: 0.49  alm: 0.28  top: 0.40  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLA431 is end
5' end seq. ID SLA431F
5' end seq. 
>SLA431F.Seq
GACAATCACAATTTTTTTTTTAAATTTCAATTAGAAACAAAAAATATATATAAAAAAAAG
AGATAAAAATGTTGAATGAAGAATTATTACCAATTTGGTTAGATCACGACTGCGGACATG
ATGATGCGTTTGCCATGTTATTAGCATTTCATTCAAAAATATTTAATATTTTAGGTATTT
CAAGTGTTCATGGTAATCAAACAGTTGATAAGACTACCATTAATGCATTGATAACATTGG
AAATCATTGGTAAATCAAATTGTGGTTATGAAGTTGTCAAAGGTGTTAGATCACCAATGT
GTAGACCTGAACAAGTATGTTCTGAAATTCATGGTGAAACAGGATTAGATTGTCCAACTG
CTGAATTACCAAAACCAACCCAACTACCAATTACAGATAGACCTGCAATTCAAGTTATGT
TTGAAAAGATATCAAAATTCTATACTGATAATCAACAAAAACAAAAAGTTATAATCGTTG
CAACAGGTTCATTAACAAATGTTGCCTTGCTATTCGCAGTTTACCCACAAATAAAACCAA
TGGTAGAAGTCTCATTATTGGGTGGCTCAATTAATTTTGGTAATATCTCACCAGCTGCAG
AGTATAACATTTTAGTGGATCCTGAAGCTGCAAAAGTGGTTT----------
Length of 5' end seq. 642
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -