SLA427
Library SL
(Link to library)
Clone ID SLA427
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1
Original site URL
Representative seq. ID SLA427Z
(Link to Original site)
Representative DNA sequence
>SLA427 (SLA427Q) /CSM/SL/SLA4-B/SLA427Q.Seq.d/
XXXXXXXXXXTACAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGC
AAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATC
AACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCAT
CTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCT
CAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATT
CATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCAC
TGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTAT
GGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGAAA
GAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACA
ACTCATTCTTATTTTCCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTT
TAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACATATTAAAATTTA
sequence update 1997. 5.19
Translated Amino Acid sequence
---NIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSIS
KQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTA
AAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGKKRL*idstpplq*q*ikiiql
iliflysnqcicqlty*lfkhtlfnfktikiyilkf


Translated Amino Acid sequence (All Frames)
Frame A:
---ttllvtlkwpqlqlsmqtlml*cqsppqpkpqslnhqprlstvrpplnhhqahhhps
lnnsfq*sfvqvllmllvtsmslpqkpiklklplvlysnssqpqllkvmspqlavspqal
llllnklpvlllllpkkllwllplkfgql*ihhvtvnverrdykliqlllsndnklk*yn
sflfsfiltnvfvn*linflntpfsilkq*kfty*nl


Frame B:
---qhcw*r*ngrncnclckh*cfnvnhhlnpnlnlsiinqdcqr*dhhsiiikliiihl
*tirsndrlfryc*ccw*pqcrclrsqss*nclwyciqihlspsc*r*clls*lshlkhc
cccstscrccccccpkscygccl*slvnckftm*l*mwkeeiin*fnssspmtin*nntt
hsyfplf*pmylsinlltf*thpfqf*nnknlhiki


Frame C:
---NIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSIS
KQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTA
AAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGKKRL*idstpplq*q*ikiiql
iliflysnqcicqlty*lfkhtlfnfktikiyilkf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA427 (SLA427Q) /CSM/SL/SLA4-B/SLA427Q.Seq.d/ 690 0.0
SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/ 686 0.0
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/ 686 0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 686 0.0
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/ 686 0.0
SLE216 (SLE216Q) /CSM/SL/SLE2-A/SLE216Q.Seq.d/ 686 0.0
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/ 686 0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 686 0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 686 0.0
SHL325 (SHL325Q) /CSM/SH/SHL3-B/SHL325Q.Seq.d/ 686 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052251) Dictyostelium discoideum slug cDNA, clone SLA427. 444 0.0 3
(AU034778) Dictyostelium discoideum slug cDNA, clone SLE320. 420 0.0 3
(AU034962) Dictyostelium discoideum slug cDNA, clone SLE412. 420 0.0 3
(AU039318) Dictyostelium discoideum slug cDNA, clone SLH545. 420 0.0 3
(AU033540) Dictyostelium discoideum slug cDNA, clone SLB147. 420 0.0 3
(AU034706) Dictyostelium discoideum slug cDNA, clone SLE216. 418 0.0 3
(BJ409259) Dictyostelium discoideum cDNA clone:dds40f12, 3' ... 412 0.0 3
(AU052214) Dictyostelium discoideum slug cDNA, clone SLA259. 420 0.0 3
(BJ409753) Dictyostelium discoideum cDNA clone:dds42k03, 3' ... 412 0.0 3
(BJ403360) Dictyostelium discoideum cDNA clone:dds24k20, 3' ... 412 0.0 3
dna update 2009. 1.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 194 1e-48
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR... 34 4.1
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF... 33 5.4

protein update 2009. 1.19
PSORT

psg: 0.88 gvh: 0.54 alm: 0.41 top: 0.40 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: vacuolar
8.0 %: endoplasmic reticulum

>> prediction for SLA427 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA427Z
3' end seq.
>SLA427Z.Seq
----------TACAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGC
AAACATTGATGCTTTAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATC
AACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCAT
CTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCT
CAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATT
CATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCAC
TGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTAT
GGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGAAA
GAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACA
ACTCATTCTTATTTTCCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTT
TAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACATATTAAAATTTA
Length of 3' end seq. 643
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -