SLA423
Library SL
(Link to library)
Clone ID SLA423
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03788-1
Original site URL
Representative seq. ID SLA423F
(Link to Original site)
Representative DNA sequence
>SLA423 (SLA423Q) /CSM/SL/SLA4-A/SLA423Q.Seq.d/
AAATCAACTACAGTATTGGTTGATGATGATTTAAGTACAATAACAATTGTAAATAGTAAA
AACAGTAAAAACAACAACAACAACAACAAAGCTAGATTCTGTTCACAATGTTGTGCTTTT
AAACCACCAAGAACTCATCATTGTAAACAATGTAAAAGATGTATTCTAAAACATGATCAT
CATTGTCCTTGGATTGGTAATTGTACTGGTTTTAGAAATCAAAAGTTTTTCATTCAATTT
TTATTTTATGTTGTAATATTAACTTCAATTACAATCACAACTTTAACTATATCAGGTTTT
TATATTTTAAATGTTAATTTAAATTTAAATGATTCAAATAGTGCTAAAATTAATAATAAT
AATAATAACAATTCAAATGAAGTTGATTTTTTAGTATCAAGTATAATAGTAACAATAATG
TATATTTTTAATTTCTCTGGTGTATTACCAGTATTGTTAGGTGTTAGTGGTTTATTCTTC
TTTCAAATGGAATTTTTGTTAGGAAATTATACACCCGTTGAAAGATATGACAGAAAGAAA
GAAGGAAAATATGCAAGAAGGAATGGATTAAAATATAAATGGAAATTCGATAAAGGTTGG
AAATTTAATTTTAGAGXXXXXXXXXX
sequence update 1999. 2.19
Translated Amino Acid sequence
KSTTVLVDDDLSTITIVNSKNSKNNNNNNKARFCSQCCAFKPPRTHHCKQCKRCILKHDH
HCPWIGNCTGFRNQKFFIQFLFYVVILTSITITTLTISGFYILNVNLNLNDSNSAKINNN
NNNNSNEVDFLVSSIIVTIMYIFNFSGVLPVLLGVSGLFFFQMEFLLGNYTPVERYDRKK
EGKYARRNGLKYKWKFDKGWKFNFR---


Translated Amino Acid sequence (All Frames)
Frame A:
KSTTVLVDDDLSTITIVNSKNSKNNNNNNKARFCSQCCAFKPPRTHHCKQCKRCILKHDH
HCPWIGNCTGFRNQKFFIQFLFYVVILTSITITTLTISGFYILNVNLNLNDSNSAKINNN
NNNNSNEVDFLVSSIIVTIMYIFNFSGVLPVLLGVSGLFFFQMEFLLGNYTPVERYDRKK
EGKYARRNGLKYKWKFDKGWKFNFR---


Frame B:
nqlqywlmmi*vq*ql*ivktvkttttttkldsvhnvvllnhqeliivnnvkdvf*nmii
ivlglvivlvleiksfsfnfyfml*y*lqlqsql*lyqvfif*mli*i*miqivlkliii
iitiqmklif*yqv***q*ciflislvyyqyc*vlvvyssfkwnfc*eiihplkdmterk
kenmqegmd*ningnsikvgnlil---


Frame C:
inysig***fkynnnck**kq*kqqqqqqs*ilftmlcf*ttknssl*tm*kmyskt*ss
lsldw*lywf*kskvfhsifilccninfnynhnfnyirflyfkc*fkfk*fk*c*n****
**qfk*s*ffsikynsnnnvyf*flwcitsivrc*wfillsngifvrklytr*ki*qker
rkickkewiki*meir*rlei*f*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA423 (SLA423Q) /CSM/SL/SLA4-A/SLA423Q.Seq.d/ 492 e-138
VSK439 (VSK439Q) /CSM/VS/VSK4-B/VSK439Q.Seq.d/ 38 0.16
VSD164 (VSD164Q) /CSM/VS/VSD1-C/VSD164Q.Seq.d/ 38 0.16
VHM143 (VHM143Q) /CSM/VH/VHM1-B/VHM143Q.Seq.d/ 38 0.16
SSG882 (SSG882Q) /CSM/SS/SSG8-D/SSG882Q.Seq.d/ 38 0.16
SSG778 (SSG778Q) /CSM/SS/SSG7-D/SSG778Q.Seq.d/ 38 0.16
CFH371 (CFH371Q) /CSM/CF/CFH3-C/CFH371Q.Seq.d/ 38 0.16
AFO613 (AFO613Q) /CSM/AF/AFO6-A/AFO613Q.Seq.d/ 38 0.16
SSA552 (SSA552Q) /CSM/SS/SSA5-C/SSA552Q.Seq.d/ 36 0.62
SLJ842 (SLJ842Q) /CSM/SL/SLJ8-B/SLJ842Q.Seq.d/ 36 0.62

own update 2004. 7.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU060143) Dictyostelium discoideum slug cDNA, clone SLA423. 470 0.0 3
(ES615204) NGPAP47TR NGPA Nasonia giraulti cDNA, mRNA sequence. 40 2e-05 3
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 50 2e-05 2
(EV418706) 210774888 NGP Nasonia giraulti cDNA clone 128A21 ... 40 3e-05 3
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 48 8e-05 2
(DL131174) Bax-responsive genes for drug target identificati... 48 9e-05 2
(AX537058) Sequence 659 from Patent WO02064766. 48 9e-05 2
(AR941734) Sequence 659 from patent US 7101990. 48 9e-05 2
(AR546865) Sequence 1996 from patent US 6747137. 48 1e-04 2
(FG541638) OtP011B08_013007d Onthophagus taurus pupal librar... 40 1e-04 2
dna update 2009. 1.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM910992_39(AM910992|pid:none) Plasmodium knowlesi strain H chro... 91 3e-17
AE014134_2061(AE014134|pid:none) Drosophila melanogaster chromos... 91 3e-17
CP001325_113(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 91 3e-17
CP000589_166(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 90 6e-17
Z22180_15(Z22180|pid:none) Caenorhabditis elegans Cosmid K11H3, ... 89 1e-16
(Q8I0G4) RecName: Full=Uncharacterized protein ZK757.4; &Z22180... 89 1e-16
CR954209_176(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 89 1e-16
BT038036_1(BT038036|pid:none) Zea mays full-length cDNA clone ZM... 89 1e-16
(Q6CPU8) RecName: Full=Palmitoyltransferase PFA3; EC=2.... 89 1e-16
AM910993_392(AM910993|pid:none) Plasmodium knowlesi strain H chr... 89 1e-16
protein update 2009. 5.31
PSORT

psg: 0.75 gvh: 0.29 alm: 0.25 top: 0.37 tms: 0.20 mit: 0.22 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
32.0 %: plasma membrane
8.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SLA423 is end

5' end seq. ID SLA423F
5' end seq.
>SLA423F.Seq
AAATCAACTACAGTATTGGTTGATGATGATTTAAGTACAATAACAATTGTAAATAGTAAA
AACAGTAAAAACAACAACAACAACAACAAAGCTAGATTCTGTTCACAATGTTGTGCTTTT
AAACCACCAAGAACTCATCATTGTAAACAATGTAAAAGATGTATTCTAAAACATGATCAT
CATTGTCCTTGGATTGGTAATTGTACTGGTTTTAGAAATCAAAAGTTTTTCATTCAATTT
TTATTTTATGTTGTAATATTAACTTCAATTACAATCACAACTTTAACTATATCAGGTTTT
TATATTTTAAATGTTAATTTAAATTTAAATGATTCAAATAGTGCTAAAATTAATAATAAT
AATAATAACAATTCAAATGAAGTTGATTTTTTAGTATCAAGTATAATAGTAACAATAATG
TATATTTTTAATTTCTCTGGTGTATTACCAGTATTGTTAGGTGTTAGTGGTTTATTCTTC
TTTCAAATGGAATTTTTGTTAGGAAATTATACACCCGTTGAAAGATATGACAGAAAGAAA
GAAGGAAAATATGCAAGAAGGAATGGATTAAAATATAAATGGAAATTCGATAAAGGTTGG
AAATTTAATTTTAGAG----------
Length of 5' end seq. 616
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -