SLA367
Library SL
(Link to library)
Clone ID SLA367
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15676-1
Original site URL
Representative seq. ID SLA367F
(Link to Original site)
Representative DNA sequence
>SLA367 (SLA367Q) /CSM/SL/SLA3-C/SLA367Q.Seq.d/
ATTAAAGGCAAATAAAATTGATAATGAATTAGAAAGAATGTTACAAGTTCAAAGATACTT
ATTTACTACTTTAAAAGAAACAGAAGATACAACTAGAAAACCATTAAATCCAATATTAGG
AGAAACATGGCAAGCAAATATTCATGTAAAAGATGGTGATGGTAATGATGTTACAGATAA
TTATTTCTTTGCTGAACAAATTTCACATCATCCACCAATTTCAAGTTCAACAGTTTACAA
TAAGAAGGAGGGTGTTAATTGTAXXXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence
LKANKIDNELERMLQVQRYLFTTLKETEDTTRKPLNPILGETWQANIHVKDGDGNDVTDN
YFFAEQISHHPPISSSTVYNKKEGVNC---


Translated Amino Acid sequence (All Frames)
Frame A:
ikgk*n***irknvtsskiliyyfkrnrryn*ktiksnirrnmaskysckrw*w**cyr*
lflc*tnftsstnfkfnslq*eggc*l---


Frame B:
LKANKIDNELERMLQVQRYLFTTLKETEDTTRKPLNPILGETWQANIHVKDGDGNDVTDN
YFFAEQISHHPPISSSTVYNKKEGVNC---


Frame C:
*rqiklimn*kecykfkdtylll*kkqkiqlenh*iqy*ekhgkqifm*kmvmvmmlqii
isllnkfhiihqfqvqqftirrrvli---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSE223 (SSE223Q) /CSM/SS/SSE2-A/SSE223Q.Seq.d/ 521 e-147
SSB566 (SSB566Q) /CSM/SS/SSB5-C/SSB566Q.Seq.d/ 521 e-147
SLA367 (SLA367Q) /CSM/SL/SLA3-C/SLA367Q.Seq.d/ 521 e-147
SSA108 (SSA108Q) /CSM/SS/SSA1-A/SSA108Q.Seq.d/ 507 e-143
SLG102 (SLG102Q) /CSM/SL/SLG1-A/SLG102Q.Seq.d/ 62 5e-09
SLA151 (SLA151Q) /CSM/SL/SLA1-C/SLA151Q.Seq.d/ 62 5e-09
SFI614 (SFI614Q) /CSM/SF/SFI6-A/SFI614Q.Seq.d/ 62 5e-09
SFH478 (SFH478Q) /CSM/SF/SFH4-D/SFH478Q.Seq.d/ 62 5e-09
SFE891 (SFE891Q) /CSM/SF/SFE8-D/SFE891Q.Seq.d/ 62 5e-09
CHE420 (CHE420Q) /CSM/CH/CHE4-A/CHE420Q.Seq.d/ 62 5e-09

own update 2002.12.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ488770|AJ488770.1 Dictyostelium discoideum mRNA for OSBPa protein (osbA gene). 521 e-144 1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 60 2e-05 1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 54 0.001 1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 0.002 7
AC007962|AC007962.1 Homo sapiens chromosome 17 clone 2511_J_5 map 17, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces. 50 0.015 1
AC104770|AC104770.10 Homo sapiens chromosome 17, clone RP11-960B9, complete sequence. 50 0.015 1
AC105016|AC105016.1 Homo sapiens chromosome 17 clone RP11-1081C4 map 17, LOW-PASS SEQUENCE SAMPLING. 50 0.015 1
BX649161|BX649161.1 Homo sapiens mRNA; cDNA DKFZp686J1329 (from clone DKFZp686J1329). 42 0.017 3
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 32 0.021 8
AC145192|AC145192.2 Felis catus clone RP86-2K2, WORKING DRAFT SEQUENCE, 5 ordered pieces. 40 0.023 4
dna update 2004. 1. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8MPQ7) RecName: Full=Oxysterol-binding protein 1; AltName: Ful... 183 1e-45
(O74178) RecName: Full=Protein kes1; &AL034353_4(AL034353|pid:n... 61 1e-08
(Q54NM4) RecName: Full=Oxysterol-binding protein 10; AltName: Fu... 60 2e-08
Z70269_4(Z70269|pid:none) Caenorhabditis elegans Cosmid ZK1086, ... 58 9e-08
Z70269_3(Z70269|pid:none) Caenorhabditis elegans Cosmid ZK1086, ... 58 9e-08
T27691(T27691)hypothetical protein ZK1086.1 - Caenorhabditis ele... 58 9e-08
(Q86HV4) RecName: Full=Oxysterol-binding protein 6; AltName: Ful... 57 2e-07
(P0C199) RecName: Full=Protein KES1; 55 7e-07
(Q86KG4) RecName: Full=Oxysterol-binding protein 4; AltName: Ful... 54 1e-06
AY558047_1(AY558047|pid:none) Saccharomyces cerevisiae clone FLH... 54 1e-06
protein update 2009. 5.31
PSORT

psg: 0.75 gvh: 0.33 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SLA367 is cyt

5' end seq. ID SLA367F
5' end seq.
>SLA367F.Seq
ATTAAAGGCAAATAAAATTGATAATGAATTAGAAAGAATGTTACAAGTTCAAAGATACTT
ATTTACTACTTTAAAAGAAACAGAAGATACAACTAGAAAACCATTAAATCCAATATTAGG
AGAAACATGGCAAGCAAATATTCATGTAAAAGATGGTGATGGTAATGATGTTACAGATAA
TTATTTCTTTGCTGAACAAATTTCACATCATCCACCAATTTCAAGTTCAACAGTTTACAA
TAAGAAGGAGGGTGTTAATTGTA----------
Length of 5' end seq. 263
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -