SLA340
Library SL
(Link to library)
Clone ID SLA340
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SLA340 (SLA340Q) /CSM/SL/SLA3-B/SLA340Q.Seq.d/
XXXXXXXXXXAACTGCGGTAAGCCCTCCCCCATCCCAACCTGCACCAGGAAGCTCTCCCC
CATCTCCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCACCAAGCTCTGCTC
CATCTACATCTGCACCATCTCCATCTGCATCATCTTCATCTGCATCATCTGCAGCAACTA
CAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAGCCGCAACCA
CAGCTACAACCACAGCCACAGCGACAGCTACAACCACAGCTGCAACCATAGCTACAACCA
CAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAACCA
CAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAATTTT
TTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCT
sequence update 1997. 7. 2
Translated Amino Acid sequence
---CGKPSPIPTCTRKLSPISICIIKLCPIFICITKLCSIYICTISICIIFICIICSNYS
CNYNCNYSCNYNCNYSRNHSYNHSHSDSYNHSCNHSYNHSCNYNCNYNRNHSYNHSYNHS
YLLNLIKKHFLSSITTIIFLIIIVSKNDIKNPLFFS


Translated Amino Acid sequence (All Frames)
Frame A:
---tavspppsqpapgssppspsassssapsssaspssapstsapspsassssassaatt
aattiattaatttattaattatttatatatttaatiatttaatttatttattatttattt
ats*i*sknifyqvslq*ff****yqkmilkipffs


Frame B:
---lr*alphpnlhqealphlhlhhqalphlhlhhqallhlhlhhlhlhhlhlhhlqqlq
lqlqlqlqlqlqlqlqpqpqlqpqpqrqlqpqlqp*lqpqlqlqlqlqpqpqlqpqlqpq
lplkfnqktffikyhynnffnnnsikk*y*kspffl


Frame C:
---CGKPSPIPTCTRKLSPISICIIKLCPIFICITKLCSIYICTISICIIFICIICSNYS
CNYNCNYSCNYNCNYSRNHSYNHSHSDSYNHSCNHSYNHSCNYNCNYNRNHSYNHSYNHS
YLLNLIKKHFLSSITTIIFLIIIVSKNDIKNPLFFS


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA340 (SLA340Q) /CSM/SL/SLA3-B/SLA340Q.Seq.d/ 852 0.0
SLB224 (SLB224Q) /CSM/SL/SLB2-A/SLB224Q.Seq.d/ 708 0.0
SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/ 704 0.0
SLH738 (SLH738Q) /CSM/SL/SLH7-B/SLH738Q.Seq.d/ 704 0.0
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/ 704 0.0
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/ 704 0.0
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/ 704 0.0
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/ 704 0.0
SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/ 704 0.0
SLG229 (SLG229Q) /CSM/SL/SLG2-B/SLG229Q.Seq.d/ 704 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 464 e-160 6
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 456 e-159 4
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 84 1e-13 8
BX511100|BX511100.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-57M13. 76 4e-10 3
BX000361|BX000361.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-181F18. 74 2e-09 3
AC093947|AC093947.6 Rattus norvegicus clone CH230-191J18, WORKING DRAFT SEQUENCE, 1 ordered piece. 56 2e-09 5
AL929014|AL929014.11 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-198B3. 74 3e-08 6
AL271780|AL271780.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 078G23 of library G from Tetraodon nigroviridis. 48 2e-07 2
CB714934|CB714934.1 AMGNNUC:MRPE3-00062-C4-A placenta embryo D17 (10379) Rattus norvegicus cDNA clone mrpe3-00062-c4 5', mRNA sequence. 50 3e-07 2
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 64 4e-07 6
dna update 2003. 7.14
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 175,878,671
protein update 2009. 4.18
PSORT

psg: 0.83 gvh: 0.44 alm: 0.14 top: 0.40 tms: 0.20 mit: 0.53 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: mitochondrial
28.0 %: endoplasmic reticulum
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: nuclear

>> prediction for SLA340 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA340Z
3' end seq.
>SLA340Z.Seq
----------
AACTGCGGTAAGCCCTCCCCCATCCCAACCTGCACCAGGAAGCTCTCCC
CCATCTCCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCACCAAGCTCTGCT
CCATCTACATCTGCACCATCTCCATCTGCATCATCTTCATCTGCATCATCTGCAGCAACT
ACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAGCCGCAACC
ACAGCTACAACCACAGCCACAGCGACAGCTACAACCACAGCTGCAACCATAGCTACAACC
ACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAACC
ACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAATTT
TTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCT


Length of 3' end seq. 466
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -