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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA328
Library SL
(Link to library)
Clone ID SLA328
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01107-1
Original site URL
Representative seq. ID SLA328Z
(Link to Original site)
Representative DNA sequence 
>SLA328 (SLA328Q) /CSM/SL/SLA3-B/SLA328Q.Seq.d/
XXXXXXXXXXGGCAAGTAGAATCATTATAATCAATCATGGATATATTAGTGGGGTGAATC
ATCACATCTTCACATCATCTTCATCATCAAATTCTTCACCCTCTGTATTAGTAGTACCTT
CATCACCAATTAAATCATTTATACAATCTTCTTCATCATCGTCCGCTTCTTCTGCATCAC
CATCATCAATTTCACCAAAGAAAAGATGGCTTTCAATATCAAGATCTGCGATCTTGTTCG
TCAAATATAAATACACCAATTGCAACCTCCTCACCTTCAACTTGTACAGTACCAAATTCA
ATTCATCATGATGACTATCAAGATCAACCAAAGAAAAGAATAAAGGCAACCGTGGCCTAA
AAAAATAATATAAAAATAAA
sequence update 1997. 7. 2
Translated Amino Acid sequence 
---ASRIIIINHGYISGVNHHIFTSSSSSNSSPSVLVVPSSPIKSFIQSSSSSSASSASP
SSISPKKRWLSISRSAILFVKYKYTNCNLLTFNLYSTKFNSS**lsrstkeknkgnrglk
k*yknk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ASRIIIINHGYISGVNHHIFTSSSSSNSSPSVLVVPSSPIKSFIQSSSSSSASSASP
SSISPKKRWLSISRSAILFVKYKYTNCNLLTFNLYSTKFNSS**lsrstkeknkgnrglk
k*yknk


Frame B:
---qvesl*simdilvg*iitsshhlhhqilhply**ylhhqlnhlynllhhrplllhhh
hqfhqrkdgfqyqdlrscssnintpiatsspstctvpnsihhddyqdqpkkrikatva*k
nniki


Frame C:
---k*nhynqswiy*wgesshlhiifiikfftlcisstfitn*iiytiffiivrffciti
inftkekmafnikicdlvrqi*ihqlqpphlqlvqyqiqfimmtikinqrke*rqpwpkk
ii*k*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA328 (SLA328Q) /CSM/SL/SLA3-B/SLA328Q.Seq.d/                        531   e-150
SLB112 (SLB112Q) /CSM/SL/SLB1-A/SLB112Q.Seq.d/                        478   e-134
SHD770 (SHD770Q) /CSM/SH/SHD7-C/SHD770Q.Seq.d/                         44   0.002
AHF807 (AHF807Q) /CSM/AH/AHF8-A/AHF807Q.Seq.d/                         44   0.002
SSI418 (SSI418Q) /CSM/SS/SSI4-A/SSI418Q.Seq.d/                         42   0.006
SFE765 (SFE765Q) /CSM/SF/SFE7-C/SFE765Q.Seq.d/                         42   0.006
CHJ474 (CHJ474Q) /CSM/CH/CHJ4-D/CHJ474Q.Seq.d/                         42   0.006
AFD187 (AFD187Q) /CSM/AF/AFD1-D/AFD187Q.Seq.d/                         42   0.006
VHC427 (VHC427Q) /CSM/VH/VHC4-B/VHC427Q.Seq.d/                         36   0.37
VFH610 (VFH610Q) /CSM/VF/VFH6-A/VFH610Q.Seq.d/                         36   0.37
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   258   e-140  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   7e-04  17
AQ770657|AQ770657.1 HS_5365_B1_H10_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=941 Col=19 Row=P, genomic survey sequence.    38   0.31   2
AC144473|AC144473.5 Medicago truncatula clone mth2-15l5, complete sequence.    46   0.32   3
AE017149|AE017149.1 Helicobacter hepaticus ATCC 51449 section 6 of 6 of the complete genome.    46   0.34   1
CA965222|CA965222.1 CcLL01a01k24f1 Carp liver library 1 Cyprinus carpio cDNA clone 01k24 5', mRNA sequence.    38   0.48   2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   0.60   8
AC104862|AC104862.4 Mus musculus clone RP23-124I9, WORKING DRAFT SEQUENCE, 10 ordered pieces.    34   0.69   2
AC117460|AC117460.7 Homo sapiens 3 BAC RP11-343D2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36   0.75   5
AC116347|AC116347.2 Homo sapiens chromosome 5 clone RP11-274E7, complete sequence.    44   0.87   2
dna update 2004. 1. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_41(AC116957|pid:none) Dictyostelium discoideum chromoso...    89   6e-17
AC115680_34(AC115680|pid:none) Dictyostelium discoideum chromoso...    32   5.2
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ...    32   8.8
protein update 2009. 1.19
PSORT 

 psg: 0.87  gvh: 0.62  alm: 0.47  top: 0.50  tms: 0.00  mit: 0.92  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SLA328 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA328Z
3' end seq. 
>SLA328Z.Seq
----------GGCAAGTAGAATCATTATAATCAATCATGGATATATTAGTGGGGTGAATC
ATCACATCTTCACATCATCTTCATCATCAAATTCTTCACCCTCTGTATTAGTAGTACCTT
CATCACCAATTAAATCATTTATACAATCTTCTTCATCATCGTCCGCTTCTTCTGCATCAC
CATCATCAATTTCACCAAAGAAAAGATGGCTTTCAATATCAAGATCTGCGATCTTGTTCG
TCAAATATAAATACACCAATTGCAACCTCCTCACCTTCAACTTGTACAGTACCAAATTCA
ATTCATCATGATGACTATCAAGATCAACCAAAGAAAAGAATAAAGGCAACCGTGGCCTAA
AAAAATAATATAAAAATAAA
Length of 3' end seq. 370
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -