SLA275
Library SL
(Link to library)
Clone ID SLA275
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01085-1
Original site URL
Representative seq. ID SLA275P
(Link to Original site)
Representative DNA sequence
>SLA275 (SLA275Q) /CSM/SL/SLA2-D/SLA275Q.Seq.d/
CTGCAATTTCAATCTCACTATTGCATGAGTTTCACATGTGGAATCAAATAATATTTTTAA
TGATCTATCTACTGCAACAGATCCAACAAAACATGGTATAATATAAAAAAAAAAAAAAAA
ATTAGACGATAACTATTATAGTTTAAATTATTTATAACATATCTTGGTACATGAATCTTT
ATTATTTAATGATCAAAATCAAAGTTGGAAATATACTGAACTCACCACTATATTGGCAAC
CGCAACAAATCTTTTATCACCTAAAAAAAGTGAAGATGTTGGATTTTTTATTATTGGTGA
AACAGAATCATTCAATTTTACAATTACAATTAGAATATTATCAGTTTTTCATTACAATTT
AGATAGAGTTGATGATATTATTTGTCTTTTTGATAAATTACCAGGAGTTTTTTAATAATC
CTGATTATTTTNNAATTTTCACAAAAGAATATTGTTTATATAGTTTATCATCAAGTTATT
ACCTTGAATTATTTATCAATTATXXXXXXXXXXTATTGCAAATCTAAATGATAATACAAT
CCAATTATCTTTATAATTGTCTTGGTATTGCATCTGAAAAAGGTTACACTCAAAACATAA
TATCATCCGATCAAAATAGTCAATATTTATTAAAAATTCAAACCAAATCAAATCAATCAT
CATCATTATTAAATTCAAAATTATTAAATGATATAGTTGTTATATCAATAGATCGGTCAA
ATTATGAATTATCAAATCTATTAATAGATTTTATTGATTCTCTGCAAACGATCAAAATAC
TTTAAAAATGAAAATATTAAAATCAAAATAACAAAACATCACATAATCTAACAATTTTTC
CATTTATATACTGAAGATTTGTTAATAATTCAGTTCTTTCATTAAAATCATTTTCTTCAA
TACATGATATATTCACCGAGGCTCATACCATCTGCTCCTTGACCAAAAACCATTTTGCAA
TCTTCAAAGTAATCTCTTGAGAATTTATAATGTTTAAAAAGGATAATGTCAATTATTTTT
ACCATTTTTTCTTTACAGTCGGCCGTACATACACTGGGTTTAAACATTGGAAATTCATCT
GGATCTGTTAATAGCCACAGGTATTTACTACTATTTTCCTCAGCTTCTTCAACAGAAAGA
TCTAAATGTGGGCACTCAACAGAAGTTCTTTCTTTCATTATTTAAGTTGTAATATGTTTG
TGATGAAGTTTTATTTTAATCTTAGTAAAAAA
sequence update 1999. 1.12
Translated Amino Acid sequence
aisisllhefhmwnqiiflmiyllqqiqqnmv*ykkkkkn*titiiv*iiyniswymnly
ylmikikvgnilnsplywqpqqifyhlkkvkmldflllvkqnhsilqlqleyyqffiti*
IELMILFVFLINYQEFFNNPDYFXIFTKEYCLYSLSSSYYLELFINY---

---IANLNDNTIQLSL*lswyci*krlhskhniirsk*sifiknsnqiksiiiiikfkii
k*yscyinrsvkl*iiksinrfy*fsandqntlkmkilksk*qnit*snnfsiyilkic*
*fssfikiiffnt*yihrgsyhllldqkpfcnlqsnllriynv*kg*cqlflpfflysrp
yihwv*tleihldlliatgiyyyfpqllqqkdlnvgtqqkfflslfkl*yvcdevlf*s*
*k


Translated Amino Acid sequence (All Frames)
Frame A:
lqfqshycmsftcgik*yf**siycnrsnktwynikkkkkirr*ll*fklfitylgt*if
ii**skskleiy*thhyignrnksfit*kk*rcwifyyw*nriiqfynyn*niisfslqf
r*s**yylsf**itrsfliiliixxfsqknivyivyhqvitlnylsi---

---ycksk**ynpiifiivlvlhlkkvtlkt*yhpikivniy*kfkpnqinhhhy*iqny
*mi*llyq*igqimnyqiy**illilckrskyfknenikikitkhhii*qffhlytedll
iiqffh*nhflqymiysprlipsap*pktilqssk*slenl*clkrimsiiftifslqsa
vhtlglnignssgsvnshrylllfssassterskcghstevlsfii*vvicl**sfilil
vk

Frame B:
cnfnltia*vshvesnnifndlstatdptkhgii*kkkkklddnyyslnyl*hilvhesl
lfndqnqswkytelttilatatnllspkksedvgffiigetesfnftitirilsvfhynl
drvddiiclfdklpgvf**s*lfxnfhkrilfi*fiikllp*iiyql---

---IANLNDNTIQLSL*lswyci*krlhskhniirsk*sifiknsnqiksiiiiikfkii
k*yscyinrsvkl*iiksinrfy*fsandqntlkmkilksk*qnit*snnfsiyilkic*
*fssfikiiffnt*yihrgsyhllldqkpfcnlqsnllriynv*kg*cqlflpfflysrp
yihwv*tleihldlliatgiyyyfpqllqqkdlnvgtqqkfflslfkl*yvcdevlf*s*
*k

Frame C:
aisisllhefhmwnqiiflmiyllqqiqqnmv*ykkkkkn*titiiv*iiyniswymnly
ylmikikvgnilnsplywqpqqifyhlkkvkmldflllvkqnhsilqlqleyyqffiti*
IELMILFVFLINYQEFFNNPDYFXIFTKEYCLYSLSSSYYLELFINY---

---lqi*miiqsnylynclgiasekgytqniissdqnsqyllkiqtksnqsssllnskll
ndivvisidrsnyelsnllidfidslqtikil*k*ky*nqnnktshnltifpfiy*rfvn
nsvlslksfssihdifteahticsltknhfaifkvis*efimfkkdnvnyfyhffftvgr
tytgfkhwkfiwic**pqvfttiflsffnrki*mwalnrssffhylscnmfvmkfyfnls
kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA275 (SLA275Q) /CSM/SL/SLA2-D/SLA275Q.Seq.d/ 876 0.0
SSA316 (SSA316Q) /CSM/SS/SSA3-A/SSA316Q.Seq.d/ 319 6e-86
SSB276 (SSB276Q) /CSM/SS/SSB2-D/SSB276Q.Seq.d/ 236 7e-61
AFN117 (AFN117Q) /CSM/AF/AFN1-A/AFN117Q.Seq.d/ 206 6e-52
SSL494 (SSL494Q) /CSM/SS/SSL4-D/SSL494Q.Seq.d/ 38 0.31
SSJ815 (SSJ815Q) /CSM/SS/SSJ8-A/SSJ815Q.Seq.d/ 38 0.31
SSD214 (SSD214Q) /CSM/SS/SSD2-A/SSD214Q.Seq.d/ 38 0.31
SLE344 (SLE344Q) /CSM/SL/SLE3-B/SLE344Q.Seq.d/ 38 0.31
SHC650 (SHC650Q) /CSM/SH/SHC6-C/SHC650Q.Seq.d/ 38 0.31
CHR553 (CHR553Q) /CSM/CH/CHR5-C/CHR553Q.Seq.d/ 38 0.31

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U63608|U63608.1 Dictyostelium discoideum Tdd-4 transposable element flanking sequence, clone p435 right end. 258 2e-64 1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 38 1e-11 23
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 34 3e-08 29
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 2e-07 27
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 52 7e-07 23
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 2e-06 29
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 32 2e-06 21
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 40 3e-06 19
AF303741|AF303741.1 Chilo iridescent virus complete genome. 36 2e-05 15
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 30 2e-05 22
dna update 2004. 1. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromoso... 43 0.019
AE014185_364(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.0

protein update 2009. 5.31
PSORT

psg: 0.75 gvh: 0.51 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: Golgi

>> prediction for SLA275 is cyt

5' end seq. ID SLA275F
5' end seq.
>SLA275F.Seq
CTGCAATTTCAATCTCACTATTGCATGAGTTTCACATGTGGAATCAAATAATATTTTTAA
TGATCTATCTACTGCAACAGATCCAACAAAACATGGTATAATATAAAAAAAAAAAAAAAA
ATTAGACGATAACTATTATAGTTTAAATTATTTATAACATATCTTGGTACATGAATCTTT
ATTATTTAATGATCAAAATCAAAGTTGGAAATATACTGAACTCACCACTATATTGGCAAC
CGCAACAAATCTTTTATCACCTAAAAAAAGTGAAGATGTTGGATTTTTTATTATTGGTGA
AACAGAATCATTCAATTTTACAATTACAATTAGAATATTATCAGTTTTTCATTACAATTT
AGATAGAGTTGATGATATTATTTGTCTTTTTGATAAATTACCAGGAGTTTTTTAATAATC
CTGATTATTTTNNAATTTTCACAAAAGAATATTGTTTATATAGTTTATCATCAAGTTATT
ACCTTGAATTATTTATCAATTAT----------
Length of 5' end seq. 503
3' end seq. ID SLA275Z
3' end seq.
>SLA275Z.Seq
----------TATTGCAAATCTAAATGATAATACAATCCAATTATCTTTATAATTGTCTT
GGTATTGCATCTGAAAAAGGTTACACTCAAAACATAATATCATCCGATCAAAATAGTCAA
TATTTATTAAAAATTCAAACCAAATCAAATCAATCATCATCATTATTAAATTCAAAATTA
TTAAATGATATAGTTGTTATATCAATAGATCGGTCAAATTATGAATTATCAAATCTATTA
ATAGATTTTATTGATTCTCTGCAAACGATCAAAATACTTTAAAAATGAAAATATTAAAAT
CAAAATAACAAAACATCACATAATCTAACAATTTTTCCATTTATATACTGAAGATTTGTT
AATAATTCAGTTCTTTCATTAAAATCATTTTCTTCAATACATGATATATTCACCGAGGCT
CATACCATCTGCTCCTTGACCAAAAACCATTTTGCAATCTTCAAAGTAATCTCTTGAGAA
TTTATAATGTTTAAAAAGGATAATGTCAATTATTTTTACCATTTTTTCTTTACAGTCGGC
CGTACATACACTGGGTTTAAACATTGGAAATTCATCTGGATCTGTTAATAGCCACAGGTA
TTTACTACTATTTTCCTCAGCTTCTTCAACAGAAAGATCTAAATGTGGGCACTCAACAGA
AGTTCTTTCTTTCATTATTTAAGTTGTAATATGTTTGTGATGAAGTTTTATTTTAATCTT
AGTAAAAAA
Length of 3' end seq. 719
Connected seq. ID SLA275P
Connected seq.
>SLA275P.Seq
CTGCAATTTCAATCTCACTATTGCATGAGTTTCACATGTGGAATCAAATAATATTTTTAA
TGATCTATCTACTGCAACAGATCCAACAAAACATGGTATAATATAAAAAAAAAAAAAAAA
ATTAGACGATAACTATTATAGTTTAAATTATTTATAACATATCTTGGTACATGAATCTTT
ATTATTTAATGATCAAAATCAAAGTTGGAAATATACTGAACTCACCACTATATTGGCAAC
CGCAACAAATCTTTTATCACCTAAAAAAAGTGAAGATGTTGGATTTTTTATTATTGGTGA
AACAGAATCATTCAATTTTACAATTACAATTAGAATATTATCAGTTTTTCATTACAATTT
AGATAGAGTTGATGATATTATTTGTCTTTTTGATAAATTACCAGGAGTTTTTTAATAATC
CTGATTATTTTNNAATTTTCACAAAAGAATATTGTTTATATAGTTTATCATCAAGTTATT
ACCTTGAATTATTTATCAATTAT----------TATTGCAAATCTAAATGATAATACAAT
CCAATTATCTTTATAATTGTCTTGGTATTGCATCTGAAAAAGGTTACACTCAAAACATAA
TATCATCCGATCAAAATAGTCAATATTTATTAAAAATTCAAACCAAATCAAATCAATCAT
CATCATTATTAAATTCAAAATTATTAAATGATATAGTTGTTATATCAATAGATCGGTCAA
ATTATGAATTATCAAATCTATTAATAGATTTTATTGATTCTCTGCAAACGATCAAAATAC
TTTAAAAATGAAAATATTAAAATCAAAATAACAAAACATCACATAATCTAACAATTTTTC
CATTTATATACTGAAGATTTGTTAATAATTCAGTTCTTTCATTAAAATCATTTTCTTCAA
TACATGATATATTCACCGAGGCTCATACCATCTGCTCCTTGACCAAAAACCATTTTGCAA
TCTTCAAAGTAATCTCTTGAGAATTTATAATGTTTAAAAAGGATAATGTCAATTATTTTT
ACCATTTTTTCTTTACAGTCGGCCGTACATACACTGGGTTTAAACATTGGAAATTCATCT
GGATCTGTTAATAGCCACAGGTATTTACTACTATTTTCCTCAGCTTCTTCAACAGAAAGA
TCTAAATGTGGGCACTCAACAGAAGTTCTTTCTTTCATTATTTAAGTTGTAATATGTTTG
TGATGAAGTTTTATTTTAATCTTAGTAAAAAA
Length of connected seq. 1222
Full length Seq ID -
Full length Seq. -
Length of full length seq. -