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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA267
Library SL
(Link to library)
Clone ID SLA267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLA267E
(Link to Original site)
Representative DNA sequence 
>SLA267 (SLA267Q) /CSM/SL/SLA2-C/SLA267Q.Seq.d/
AAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCA
TCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACC
TCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAAAAATTGTGGTATT
GCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATG
TTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAAT
AATTTCTAATTGTATA
sequence update 1997. 6. 5
Translated Amino Acid sequence 
KQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKKNCGI
ASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknnnf*ly
Translated Amino Acid sequence (All Frames) 
Frame A:
KQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKKNCGI
ASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknnnf*ly


Frame B:
nkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrierkivvl
hqlalihlprfmvpk*igecldlssnlkcfsikkikikiiisnci


Frame C:
tnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*keklwyc
is*llstcldlwfqne*envwiylvt*nvfllkk*k*k**fliv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA267 (SLA267Q) /CSM/SL/SLA2-C/SLA267Q.Seq.d/                        549   e-156
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        541   e-153
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        541   e-153
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        541   e-153
SSL430 (SSL430Q) /CSM/SS/SSL4-B/SSL430Q.Seq.d/                        541   e-153
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        541   e-153
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        541   e-153
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        541   e-153
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        541   e-153
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        541   e-153
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   541   e-156  2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   287   e-140  4
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88   8e-14  1
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88   8e-14  1
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82   5e-12  1
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76   3e-10  1
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.    76   3e-10  1
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46   3e-07  2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50   0.018  1
AC090925|AC090925.1 Homo sapiens clone RP11-467L20, LOW-PASS SEQUENCE SAMPLING.    38   0.090  2
dna update 2004. 1. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   126   2e-28
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    76   4e-13
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    74   2e-12
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    74   2e-12
Y14966_1(Y14966|pid:none) Penaeus vannamei gene encoding catheps...    72   8e-12
(Q94503) RecName: Full=Cysteine proteinase 6;          EC=3.4.22...    70   3e-11
AJ489298_1(AJ489298|pid:none) Aphis gossypii mRNA for putative c...    69   5e-11
(P09648) RecName: Full=Cathepsin L1;          EC=3.4.22.15; Cont...    69   5e-11
AJ496197_1(AJ496197|pid:none) Myzus persicae mRNA for putative c...    69   5e-11
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    69   5e-11
protein update 2009. 7. 4
PSORT 

 psg: 0.38  gvh: 0.41  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLA267 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA267E
Full length Seq. 
>SLA267E.Seq
AAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCA
TCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACC
TCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAAAAATTGTGGTATT
GCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATG
TTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAAT
AATTTCTAATTGTATA
Length of full length seq. 316