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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA266
Library SL
(Link to library)
Clone ID SLA266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLA266Z
(Link to Original site)
Representative DNA sequence 
>SLA266 (SLA266Q) /CSM/SL/SLA2-C/SLA266Q.Seq.d/
XXXXXXXXXXTATCTATATGCCTCTGGTCGTACCACTGGTATTGTTATGGATTCAGGTGA
TGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTACG
TTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGG
TTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGC
CTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGA
AAAATCATACGAATTACCAGACGGTCAAGTCATCACCATTGGTAACGAACGTTTCCGTTG
TCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAAC
CACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGT
CGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATT
AACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCCCCACCAGAACGTAAATA
CTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTGGAT
CTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAAC
AATTAATAAATATGTTGTATTTTATTTAAAAA
sequence update 1997. 6. 5
Translated Amino Acid sequence 
---LYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGY
SFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCP
EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELT
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*ti
nkyvvfylk
Translated Amino Acid sequence (All Frames) 
Frame A:
---iymplvvplvllwiqvmvsptlyqsmkvmpyhmpsyv*i*lvvillit**ks*lnvv
thsppllkeksseiskkn*ptspstlklkckllphhqpsknhtnyqtvkssplvtnvsvv
qkpssnhhs*vwnqlvstkppttps*nvmlisvkiytvtssypvvqlcsqvlliv*tkn*
ll*phqp*klkslphqnvntlfglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskq
linmlyfi*k


Frame B:
---siclwsyhwycygfr*wclphctnl*rlclttchltfrfsws*sy*lhdenln*twl
lihhhc*krnrqryqrkislrrprl*s*nanccliisprkiiritrrsshhhw*rtfpls
rsplptiilrygiswyprnhlqlhhem*c*yp*rfir*rrlirwynyvpryc*syeqrin
cfspinhen*nhcptrt*ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn
**iccilfk


Frame C:
---LYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGY
SFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCP
EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELT
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*ti
nkyvvfylk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA266 (SLA266Q) /CSM/SL/SLA2-C/SLA266Q.Seq.d/                       1471   0.0
VHA591 (VHA591Q) /CSM/VH/VHA5-D/VHA591Q.Seq.d/                       1459   0.0
VFM615 (VFM615Q) /CSM/VF/VFM6-A/VFM615Q.Seq.d/                       1459   0.0
VFG738 (VFG738Q) /CSM/VF/VFG7-B/VFG738Q.Seq.d/                       1459   0.0
VFD695 (VFD695Q) /CSM/VF/VFD6-D/VFD695Q.Seq.d/                       1459   0.0
SLH419 (SLH419Q) /CSM/SL/SLH4-A/SLH419Q.Seq.d/                       1459   0.0
SLB239 (SLB239Q) /CSM/SL/SLB2-B/SLB239Q.Seq.d/                       1459   0.0
SLB152 (SLB152Q) /CSM/SL/SLB1-C/SLB152Q.Seq.d/                       1459   0.0
SLA764 (SLA764Q) /CSM/SL/SLA7-C/SLA764Q.Seq.d/                       1459   0.0
SFG379 (SFG379Q) /CSM/SF/SFG3-D/SFG379Q.Seq.d/                       1459   0.0
own update 2002.12.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1332   0.0    1
X03281|X03281.1 Dictyostelium discoideum gene for actin A8.      1300   0.0    1
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        1263   0.0    1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.  1263   0.0    1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1205   0.0    1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.  1088   0.0    10
X03282|X03282.1 dictyostelium discoideum gene for actin A12.     1070   0.0    1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1065   0.0    7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   952   0.0    1
X03283|X03283.1 Dictyostelium discoideum gene for actin A3-S1.    777   0.0    1
dna update 2004. 1. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   468   e-131
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   468   e-131
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        468   e-131
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   464   e-129
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   464   e-129
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   462   e-129
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          460   e-128
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   459   e-128
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   457   e-127
AY615872_1(AY615872|pid:none) Phalansterium solitarium clone B a...   456   e-127
protein update 2009. 5.31
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for SLA266 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA266Z
3' end seq. 
>SLA266Z.Seq
----------TATCTATATGCCTCTGGTCGTACCACTGGTATTGTTATGGATTCAGGTGA
TGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTACG
TTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGG
TTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGC
CTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGA
AAAATCATACGAATTACCAGACGGTCAAGTCATCACCATTGGTAACGAACGTTTCCGTTG
TCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAAC
CACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGT
CGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATT
AACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCCCCACCAGAACGTAAATA
CTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTGGAT
CTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAAC
AATTAATAAATATGTTGTATTTTATTTAAAAA
Length of 3' end seq. 742
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -