SLA264
Library SL
(Link to library)
Clone ID SLA264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15069-1
Original site URL
Representative seq. ID SLA264E
(Link to Original site)
Representative DNA sequence
>SLA264 (SLA264Q) /CSM/SL/SLA2-C/SLA264Q.Seq.d/
GTATGATAATGGTTTGCCTGATTTACCGATACCTTTTTCATACAAAGGATCATCTTTCCA
TCGTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGG
TGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGG
TCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTAT
CTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGA
AGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAA
ACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAA
TAATTAATAATAATAAAAAGAATTGATTCAATTTTTTTTTGTAAAAA
sequence update 1997. 5. 8
Translated Amino Acid sequence
YDNGLPDLPIPFSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFG
QGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTK
PVVIANCGQL*iini*lfynn****keliqfffvk


Translated Amino Acid sequence (All Frames)
Frame A:
v**wfa*ftdtffiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfr
srytlngqrwcqhqwftilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyq
tsrhcqlwstlnyqhiafl**liiikridsiffck


Frame B:
YDNGLPDLPIPFSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFG
QGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTK
PVVIANCGQL*iini*lfynn****keliqfffvk


Frame C:
mimvcliyrylfhtkdhlsivlsptlcvkvvtlpwvmvlvvnqstvtnllmktsn*nisv
kvhsqwptlvptpmvhnslsvllqlig*tvntlysvlslkvwmslkrwkllvhnqvklpn
qsslptvvnfklstysffiiinnnkkn*fnffl*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA264 (SLA264Q) /CSM/SL/SLA2-C/SLA264Q.Seq.d/ 894 0.0
VSJ435 (VSJ435Q) /CSM/VS/VSJ4-B/VSJ435Q.Seq.d/ 821 0.0
VSE143 (VSE143Q) /CSM/VS/VSE1-B/VSE143Q.Seq.d/ 821 0.0
VSC526 (VSC526Q) /CSM/VS/VSC5-B/VSC526Q.Seq.d/ 821 0.0
VSA826 (VSA826Q) /CSM/VS/VSA8-B/VSA826Q.Seq.d/ 821 0.0
VSA728 (VSA728Q) /CSM/VS/VSA7-B/VSA728Q.Seq.d/ 821 0.0
VHG230 (VHG230Q) /CSM/VH/VHG2-B/VHG230Q.Seq.d/ 821 0.0
VHF401 (VHF401Q) /CSM/VH/VHF4-A/VHF401Q.Seq.d/ 821 0.0
SSK846 (SSK846Q) /CSM/SS/SSK8-B/SSK846Q.Seq.d/ 821 0.0
SSK338 (SSK338Q) /CSM/SS/SSK3-B/SSK338Q.Seq.d/ 821 0.0

own update 2002.12.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF123597|AF123597.1 Dictyostelium discoideum cyclophilin B (cypB) mRNA, complete cds. 74 8e-23 3
M60628|M60628.1 C.albicans peptidyl-propyl cis-trans isomerase (CYP1) gene, complete cds. 52 3e-22 4
AJ537762|AJ537762.1 Timarcha balearica EST, clone Timarcha3B3. 88 5e-22 3
AJ537662|AJ537662.1 Timarcha balearica EST, clone Timarcha1F11. 88 5e-22 3
AF053068|AF053068.1 Dictyostelium discoideum cyclophilin B (CypB) gene, complete cds. 58 2e-18 4
AX536868|AX536868.1 Sequence 469 from Patent WO02064766. 52 8e-18 3
BI773236|BI773236.1 kt07e03.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q25633 Q25633 CYCLOPHILIN OVCYP-2 ;, mRNA sequence. 42 8e-15 4
BP510414|BP510414.1 Hydra magnipapillata cDNA, clone:hmp_05367. 70 1e-14 2
BP508282|BP508282.1 Hydra magnipapillata cDNA, clone:hmp_02617. 70 1e-14 2
CF658578|CF658578.1 tac55d02.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to TR:Q94794 Q94794 CYCLOPHILIN A ;, mRNA sequence. 70 1e-14 2
dna update 2004. 1. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U47812_1(U47812|pid:none) Onchocerca volvulus cyclophilin Ovcyp-... 172 3e-42
EF133868_1(EF133868|pid:none) Alexandrium fundyense strain GT-CA... 170 1e-41
(P34790) RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP18... 170 1e-41
EU126917_1(EU126917|pid:none) Gerbera hybrid cultivar cyclophili... 170 2e-41
AY362759_1(AY362759|pid:none) Chlamys farreri cyclophilin A mRNA... 169 2e-41
EU401723_1(EU401723|pid:none) Capsicum annuum cyclophilin mRNA, ... 169 3e-41
EF208090_1(EF208090|pid:none) Aiptasia pallida cyclophilin mRNA,... 169 3e-41
EF532602_1(EF532602|pid:none) Pinus taeda putative cyclophilin (... 169 3e-41
EU953413_1(EU953413|pid:none) Zea mays clone 1409164 peptidyl-pr... 169 3e-41
EF077624_1(EF077624|pid:none) Argopecten irradians cyclophilin A... 169 4e-41
protein update 2009. 7. 4
PSORT

psg: 0.75 gvh: 0.33 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for SLA264 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA264E
Full length Seq.
>SLA264E.Seq
GTATGATAATGGTTTGCCTGATTTACCGATACCTTTTTCATACAAAGGATCATCTTTCCA
TCGTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGG
TGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGG
TCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTAT
CTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGA
AGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAA
ACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTATAA
TAATTAATAATAATAAAAAGAATTGATTCAATTTTTTTTTGTAAAAA
Length of full length seq. 467