SLA243
Library SL
(Link to library)
Clone ID SLA243
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03776-1
Original site URL
Representative seq. ID SLA243Z
(Link to Original site)
Representative DNA sequence
>SLA243 (SLA243Q) /CSM/SL/SLA2-B/SLA243Q.Seq.d/
XXXXXXXXXXAATATTATTAATAATAAAATAATAAATAATACAATTAAATATTCATCTGG
TATACTTTGGACTAGTAATACTCAAACTGTGTTTTCAAGATATCGTGATACAAATGGTGA
TATCTATCAATTCAATTATGATTCTCCATTTTCAATTTACTCAAAATTAAGATCACTTGG
TATTGGTGGTGCTGGCGTTTGGAGTTTAGATAAAATTATTGGTTTACCAAAACCAATTAT
TGATGCATTTTATTTCGCATTTAGTAGACAAGTTATTGGTGATACTTATATTGAAATTAA
TTAAAAATTAATAATAAAAAAAAAAAAAAAAATTTTGTACAAATAA
sequence update 1997. 5. 7
Translated Amino Acid sequence
---IINNKIINNTIKYSSGILWTSNTQTVFSRYRDTNGDIYQFNYDSPFSIYSKLRSLGI
GGAGVWSLDKIIGLPKPIIDAFYFAFSRQVIGDTYIEIN*kliikkkkkilyk*


Translated Amino Acid sequence (All Frames)
Frame A:
---illiik**iiqlnihlvyfglvilklcfqdiviqmvisinsimilhfqftqn*dhlv
lvvlafgv*ikllvyqnqllmhfishlvdkllvililklikn***kkkkkfctn


Frame B:
---yy***nnk*yn*ifiwytld**ysncvfkis*ykw*ylsiql*fsifnllkikitwy
wwcwrlefr*nywftktny*cilfri**tsyw*yly*n*lkinnkkkkknfvqi


Frame C:
---IINNKIINNTIKYSSGILWTSNTQTVFSRYRDTNGDIYQFNYDSPFSIYSKLRSLGI
GGAGVWSLDKIIGLPKPIIDAFYFAFSRQVIGDTYIEIN*kliikkkkkilyk*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA243 (SLA243Q) /CSM/SL/SLA2-B/SLA243Q.Seq.d/ 523 e-148
VSI424 (VSI424Q) /CSM/VS/VSI4-A/VSI424Q.Seq.d/ 42 0.005
VSH649 (VSH649Q) /CSM/VS/VSH6-C/VSH649Q.Seq.d/ 42 0.005
VSJ889 (VSJ889Q) /CSM/VS/VSJ8-D/VSJ889Q.Seq.d/ 38 0.084
VSI355 (VSI355Q) /CSM/VS/VSI3-C/VSI355Q.Seq.d/ 38 0.084
VSF329 (VSF329Q) /CSM/VS/VSF3-B/VSF329Q.Seq.d/ 38 0.084
VFO562 (VFO562Q) /CSM/VF/VFO5-C/VFO562Q.Seq.d/ 38 0.084
VFN776 (VFN776Q) /CSM/VF/VFN7-D/VFN776Q.Seq.d/ 38 0.084
VFJ507 (VFJ507Q) /CSM/VF/VFJ5-A/VFJ507Q.Seq.d/ 38 0.084
VFI743 (VFI743Q) /CSM/VF/VFI7-B/VFI743Q.Seq.d/ 38 0.084

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 38 0.001 8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 40 0.003 9
AW374287|AW374287.1 QV0-CT0018-011199-042-f11 CT0018 Homo sapiens cDNA, mRNA sequence. 34 0.007 3
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 40 0.008 6
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome. 36 0.010 9
AR409405|AR409405.1 Sequence 1 from patent US 6632935. 34 0.012 9
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 34 0.012 9
AW062928|AW062928.1 IL3-ST0024-110899-006-E05 ST0024 Homo sapiens cDNA, mRNA sequence. 34 0.024 3
AI940630|AI940630.1 IL3-ST0024-230799-001-C06 ST0024 Homo sapiens cDNA, mRNA sequence. 34 0.024 3
AW751228|AW751228.1 QV0-CT0018-011199-042-b10 CT0018 Homo sapiens cDNA, mRNA sequence. 34 0.026 3
dna update 2004. 1. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC088895_1(BC088895|pid:none) Xenopus tropicalis hypothetical LO... 42 0.006
AF085714_1(AF085714|pid:none) Bos taurus lysosomal di-N-acetylch... 40 0.024
AY260731_1(AY260731|pid:none) Xenopus laevis putative di-N-acety... 39 0.054
AC115592_28(AC115592|pid:none) Dictyostelium discoideum chromoso... 39 0.071
BC072723_1(BC072723|pid:none) Danio rerio chitobiase, di-N-acety... 38 0.092
BC164759_1(BC164759|pid:none) Danio rerio chitobiase, di-N-acety... 38 0.092
BC095064_1(BC095064|pid:none) Danio rerio chitobiase, di-N-acety... 38 0.092
BC022594_1(BC022594|pid:none) Mus musculus chitobiase, di-N-acet... 37 0.16
(Q8R242) RecName: Full=Di-N-acetylchitobiase; EC=3.2.1.... 37 0.16
AB168353_1(AB168353|pid:none) Macaca fascicularis testis cDNA cl... 37 0.21
protein update 2009. 1.19
PSORT

psg: 0.67 gvh: 0.48 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.47 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
20.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SLA243 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA243Z
3' end seq.
>SLA243Z.Seq
----------AATATTATTAATAATAAAATAATAAATAATACAATTAAATATTCATCTGG
TATACTTTGGACTAGTAATACTCAAACTGTGTTTTCAAGATATCGTGATACAAATGGTGA
TATCTATCAATTCAATTATGATTCTCCATTTTCAATTTACTCAAAATTAAGATCACTTGG
TATTGGTGGTGCTGGCGTTTGGAGTTTAGATAAAATTATTGGTTTACCAAAACCAATTAT
TGATGCATTTTATTTCGCATTTAGTAGACAAGTTATTGGTGATACTTATATTGAAATTAA
TTAAAAATTAATAATAAAAAAAAAAAAAAAAATTTTGTACAAATAA
Length of 3' end seq. 336
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -