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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA230
Library SL
(Link to library)
Clone ID SLA230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14919-1
Original site URL
Representative seq. ID SLA230E
(Link to Original site)
Representative DNA sequence 
>SLA230 (SLA230Q) /CSM/SL/SLA2-B/SLA230Q.Seq.d/
AAGAAGCCGACTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGCCGCTG
CCATTGGTAATGCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGACAATC
ATTTAATTCTTTGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAAAGCTG
CCGATATCGCTAATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGCAATTT
CACCAGGTGGTATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGAAGCCG
ATTTTGAAAAGATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAATTCAAG
GTCGTGTCGGTAAGAAATTGGTTGATTTTGTTGTTGAAATTAATAAATCAAAAGAATTAT
TAGATTTACGTAAAGAAGTTGAAGAATTCTCTTCAAAATTCACTTTACCAGGTATTTAAA
TAATAAGGTAAAAAACTTTAAA
sequence update 1997. 5. 7
Translated Amino Acid sequence 
EADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAA
DIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQG
RVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPGI*iir*ktl
Translated Amino Acid sequence (All Frames) 
Frame A:
kkptlknsksmpfklkrmplplvmls*tkvinwlqmvltii*ffgi*dqrnslvinlkkl
pislispsikmpsmvipmqfhqvvfvlvhllsqvev*rkpilkrllisliesfqsllkfk
vvsvrnwlilllklinqkny*iyvkklknslqnslyqvfk**gkkl*


Frame B:
rsrlsriqrvcpss*kecrchw*csheqrl*igykwy*qsfnslgfktkgthw**i*ksc
ryr*yhrq*kcrpw*yqcnftrwysywficshk*rfkgsrf*kdc*fp**nrfnls*nsr
scr*eig*fcc*n**ikriirft*rs*rilfkihftrylnnkvknfk


Frame C:
EADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAA
DIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQG
RVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPGI*iir*ktl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA106 (SSA106Q) /CSM/SS/SSA1-A/SSA106Q.Seq.d/                        995   0.0
SLA230 (SLA230Q) /CSM/SL/SLA2-B/SLA230Q.Seq.d/                        995   0.0
AFN743 (AFN743Q) /CSM/AF/AFN7-B/AFN743Q.Seq.d/                        995   0.0
VHA876 (VHA876Q) /CSM/VH/VHA8-D/VHA876Q.Seq.d/                        983   0.0
VFM764 (VFM764Q) /CSM/VF/VFM7-C/VFM764Q.Seq.d/                        983   0.0
VFG867 (VFG867Q) /CSM/VF/VFG8-C/VFG867Q.Seq.d/                        983   0.0
VFE478 (VFE478Q) /CSM/VF/VFE4-D/VFE478Q.Seq.d/                        983   0.0
VFC539 (VFC539Q) /CSM/VF/VFC5-B/VFC539Q.Seq.d/                        983   0.0
SFD348 (SFD348Q) /CSM/SF/SFD3-B/SFD348Q.Seq.d/                        983   0.0
SFB690 (SFB690Q) /CSM/SF/SFB6-D/SFB690Q.Seq.d/                        983   0.0
own update 2002.12.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CG974730|CG974730.1 MBEIH71TRB mth2 Medicago truncatula genomic clone 61L22, genomic survey sequence.    54   0.002  1
CG946489|CG946489.1 MBEFG90TF mth2 Medicago truncatula genomic clone 43P11, genomic survey sequence.    54   0.002  1
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    36   0.007  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.009  10
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    40   0.022  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.025  12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   0.038  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.062  9
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   0.062  8
AX344843|AX344843.1 Sequence 268 from Patent WO0200927.            48   0.11   2
dna update 2004. 1. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT070546_1(BT070546|pid:none) Picea sitchensis clone WS02735_F19...   196   2e-49
EF082716_1(EF082716|pid:none) Picea sitchensis clone WS0297_A18 ...   192   3e-48
EF150642_1(EF150642|pid:none) Populus tremuloides serine hydroxy...   190   1e-47
GN104742_1(GN104742|pid:none) Sequence 9523 from Patent WO200903...   187   1e-46
GN104744_1(GN104744|pid:none) Sequence 9525 from Patent WO200903...   187   1e-46
CS497866_1(CS497866|pid:none) Sequence 139 from Patent WO2007011...   186   3e-46
CS497860_1(CS497860|pid:none) Sequence 133 from Patent WO2007011...   184   8e-46
AF361589_1(AF361589|pid:none) Arabidopsis thaliana AT4g13930/dl3...   184   1e-45
CS497872_1(CS497872|pid:none) Sequence 145 from Patent WO2007011...   184   1e-45
CS497728_1(CS497728|pid:none) Sequence 1 from Patent WO2007011736.    184   1e-45
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLA230 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA230E
Full length Seq. 
>SLA230E.Seq
AAGAAGCCGACTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGCCGCTG
CCATTGGTAATGCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGACAATC
ATTTAATTCTTTGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAAAGCTG
CCGATATCGCTAATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGCAATTT
CACCAGGTGGTATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGAAGCCG
ATTTTGAAAAGATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAATTCAAG
GTCGTGTCGGTAAGAAATTGGTTGATTTTGTTGTTGAAATTAATAAATCAAAAGAATTAT
TAGATTTACGTAAAGAAGTTGAAGAATTCTCTTCAAAATTCACTTTACCAGGTATTTAAA
TAATAAGGTAAAAAACTTTAAA
Length of full length seq. 502