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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA221
Library SL
(Link to library)
Clone ID SLA221
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14924-1
Original site URL
Representative seq. ID SLA221E
(Link to Original site)
Representative DNA sequence 
>SLA221 (SLA221Q) /CSM/SL/SLA2-A/SLA221Q.Seq.d/
GACATGGTGCTAAATTATTGTATGTTACGCTGAAGCTACCGTTCCAAAGATCTCAATTAT
CACTCGTAAAGCTTATGGTGGTGCCTATGATGTTATGTCATCCAAACATCTTCGTGGTGA
TACCAATTACTCTTGGCCATCCGGTCAAATCGTTGTCATGGGTTCAAAAGGTGCCGTAGA
AATCATCTTTAGAGGCAAAGGTGACATCAAAGAACAAGAACAAATTTACAATGATAAATT
TGCTAATCCATTACCAGCTGCTCGTAGAGGTTTCATTGATGATATCATCCCACCAAGAAT
GTCTCGTCAATACATTTGTGAAGATTTAGAAATTCTTAAAAATAAAAAATTATCAAATCC
AACTAAAAAACATGGTAATATTGTTTTATAAAAAAAAAAAAAAAAAAGAAAATAAAGTAA
TAATTTAAAAAACTATAAAA
sequence update 1997. 5. 7
Translated Amino Acid sequence 
twc*IIVCYAEATVPKISIITRKAYGGAYDVMSSKHLRGDTNYSWPSGQIVVMGSKGAVE
IIFRGKGDIKEQEQIYNDKFANPLPAARRGFIDDIIPPRMSRQYICEDLEILKNKKLSNP
TKKHGNIVL*kkkkkrk*snnlknyk
Translated Amino Acid sequence (All Frames) 
Frame A:
dmvlnycmlr*syrskdlnyhs*slwwcl*cyviqtssw*yqlllairsnrchgfkrcrr
nhl*rqr*hqrtrtnlq**ic*sitscs*rfh**yhptknvssihl*rfrns*k*kiiks
n*ktw*ycfikkkkkkkik**fkkl*


Frame B:
twc*IIVCYAEATVPKISIITRKAYGGAYDVMSSKHLRGDTNYSWPSGQIVVMGSKGAVE
IIFRGKGDIKEQEQIYNDKFANPLPAARRGFIDDIIPPRMSRQYICEDLEILKNKKLSNP
TKKHGNIVL*kkkkkrk*snnlknyk


Frame C:
hgakllyvtlklpfqrsqlslvklmvvpmmlchpnifvvipitlghpvkslswvqkvp*k
ssleakvtsknknkftminllihyqllvevslmisshqeclvntfvki*kflkiknyqiq
lknmvilfykkkkkkenkvii*ktik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA221 (SLA221Q) /CSM/SL/SLA2-A/SLA221Q.Seq.d/                        668   0.0
VFN138 (VFN138Q) /CSM/VF/VFN1-B/VFN138Q.Seq.d/                        638   0.0
VFI840 (VFI840Q) /CSM/VF/VFI8-B/VFI840Q.Seq.d/                        638   0.0
VFG186 (VFG186Q) /CSM/VF/VFG1-D/VFG186Q.Seq.d/                        638   0.0
VFE827 (VFE827Q) /CSM/VF/VFE8-B/VFE827Q.Seq.d/                        638   0.0
VFD409 (VFD409Q) /CSM/VF/VFD4-A/VFD409Q.Seq.d/                        638   0.0
VFB788 (VFB788Q) /CSM/VF/VFB7-D/VFB788Q.Seq.d/                        638   0.0
VFB764 (VFB764Q) /CSM/VF/VFB7-C/VFB764Q.Seq.d/                        638   0.0
CFB587 (CFB587Q) /CSM/CF/CFB5-D/CFB587Q.Seq.d/                        638   0.0
AFO589 (AFO589Q) /CSM/AF/AFO5-D/AFO589Q.Seq.d/                        638   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.   605   0.0    5
BI703996|BI703996.1 kt56d06.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    66   4e-07  1
BE029972|BE029972.1 kp37c07.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:F52E4.1 CE07269 PROPIONYL-COA CARBOXYLASE BETA ;, mRNA sequence.    60   6e-07  2
BI772844|BI772844.1 kp54a04.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    60   6e-07  2
BG733740|T16428 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain F52E4.1, mRNA sequence.    64   2e-06  1
BM284982|BM284982.1 kh93d01.y1 Ascaris suum L4 pSPORT1 Zarlenga v1 Ascaris suum cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    64   2e-06  1
BM280672|BM280672.1 ki03f06.y1 Ascaris suum L4 pSPORT1 Zarlenga v1 Ascaris suum cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    64   2e-06  1
CA304894|CA304894.1 As_adfo_23G10_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_23G10 5' similar to F52E4.1b CE30139 status:Confirmed TR:Q8WQF1, mRNA sequence.    64   2e-06  1
BI772967|BI772967.1 kq13h03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    60   3e-05  1
BI773057|BI773057.1 kq34b01.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q20676 Q20676 CODED FOR BY C. ELEGANS CDNA YK74F9.5. [1] ;, mRNA sequence.    60   3e-05  1
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115592_6(AC115592|pid:none) Dictyostelium discoideum chromosom...   229   2e-59
BC067640_1(BC067640|pid:none) Danio rerio propionyl Coenzyme A c...   164   9e-40
BC118686_1(BC118686|pid:none) Xenopus tropicalis hypothetical pr...   163   2e-39
AK134437_1(AK134437|pid:none) Mus musculus 13 days embryo male t...   159   4e-38
AK004976_1(AK004976|pid:none) Mus musculus adult male liver cDNA...   159   4e-38
BC055946_1(BC055946|pid:none) Mus musculus propionyl Coenzyme A ...   159   4e-38
BC026531_1(BC026531|pid:none) Mus musculus propionyl Coenzyme A ...   159   4e-38
(Q2TBR0) RecName: Full=Propionyl-CoA carboxylase beta chain, mit...   155   4e-37
CR860849_1(CR860849|pid:none) Pongo abelii mRNA; cDNA DKFZp469O2...   155   4e-37
AK303079_1(AK303079|pid:none) Homo sapiens cDNA FLJ53115 complet...   155   4e-37
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLA221 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA221E
Full length Seq. 
>SLA221E.Seq
GACATGGTGCTAAATTATTGTATGTTACGCTGAAGCTACCGTTCCAAAGATCTCAATTAT
CACTCGTAAAGCTTATGGTGGTGCCTATGATGTTATGTCATCCAAACATCTTCGTGGTGA
TACCAATTACTCTTGGCCATCCGGTCAAATCGTTGTCATGGGTTCAAAAGGTGCCGTAGA
AATCATCTTTAGAGGCAAAGGTGACATCAAAGAACAAGAACAAATTTACAATGATAAATT
TGCTAATCCATTACCAGCTGCTCGTAGAGGTTTCATTGATGATATCATCCCACCAAGAAT
GTCTCGTCAATACATTTGTGAAGATTTAGAAATTCTTAAAAATAAAAAATTATCAAATCC
AACTAAAAAACATGGTAATATTGTTTTATAAAAAAAAAAAAAAAAAAGAAAATAAAGTAA
TAATTTAAAAAACTATAAAA
Length of full length seq. 440