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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA207
Library SL
(Link to library)
Clone ID SLA207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLA207Z
(Link to Original site)
Representative DNA sequence 
>SLA207 (SLA207Q) /CSM/SL/SLA2-A/SLA207Q.Seq.d/
XXXXXXXXXXAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCA
AAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATC
CAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCT
GTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAG
AAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCAT
CTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCA
GAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAG
GTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATA
TTTCTTAATAAATAGCATTTTATAATAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 5.16
Translated Amino Acid sequence 
---NVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIAC
KFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVR
DMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---NVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIAC
KFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVR
DMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkkkkkkkkk


Frame B:
---tfqskklkevwslvtpktihhkklknsllklssstiqvksmlvthqs*ivtlltlpv
nslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvlnpslnthh*vvspse
i*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*hfiiilkkkkkkkk


Frame C:
---rfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrsnpcwlltslrlshcshcl*
ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*ilh*iptirsfrrqr
yetnrrrrchqinrqespr*sr**ercccpikkeink*yflinsil**f*kkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        886   0.0
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/                        886   0.0
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/                        886   0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/                        886   0.0
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/                        886   0.0
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/                        886   0.0
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/                        886   0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/                        886   0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/                        886   0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/                        886   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha.   886   0.0    1
X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha.   839   0.0    1
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds.   666   0.0    1
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds.   117   3e-50  3
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds.   117   3e-50  3
AL409155|AL409155.1 T7 end of clone AV0AA013A10 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.   101   1e-46  4
AL408145|AL408145.1 T7 end of clone AV0AA006G11 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.   101   5e-46  4
AZ932350|AZ932350.1 474.dhz97h09.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz97h09.s1, DNA sequence.   111   3e-43  3
AX109679|AX109679.1 Sequence 412 from Patent WO0123604.           101   2e-42  4
AX109714|AX109714.1 Sequence 447 from Patent WO0123604.           121   4e-42  3
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   265   4e-70
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   265   4e-70
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   265   4e-70
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga...   200   2e-50
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo...   199   5e-50
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor...   199   5e-50
(Q00251) RecName: Full=Elongation factor 1-alpha;          Short...   198   6e-50
(P40911) RecName: Full=Elongation factor 1-alpha;          Short...   197   1e-49
AB326305_1(AB326305|pid:none) Solea senegalensis SseEF1A4 mRNA f...   197   1e-49
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ...   197   1e-49
protein update 2009. 5.31
PSORT 

 psg: 0.67  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLA207 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA207Z
3' end seq. 
>SLA207Z.Seq
----------AAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCA
AAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATC
CAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCT
GTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAG
AAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCAT
CTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCA
GAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAG
GTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATA
TTTCTTAATAAATAGCATTTTATAATAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 529
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -