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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA205
Library SL
(Link to library)
Clone ID SLA205
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10187-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SLA205 (SLA205Q) /CSM/SL/SLA2-A/SLA205Q.Seq.d/
GAACCTAATGTAGTTTGGAGATAGTAATAATACATTAAAACATGAATAAAACTATTTACT
AGTGTACACCACCAACTACCAACTAACCATTGGTCATGAAGCCATTGCCATGTTACTGGT
ACCATTGCCATATGATGGAAAATATGCAAAAAGATGATTGGCTTTTTCTTTAAAGCTAAA
ATGACAGTGTCAACCAATTCATAGTATTTTGATAAGTAGAAAATGTAGATCCAAAAACCA
ATTCTACCTTGTACAGATTGACTTGATTGTTCGCATACCAATGAAAATGCACTTTGCTCT
AAATATTGTTGGTATGCTGCATACATAACACCTGACATCATTGAAAATGATAATATAATT
AAATTAATGTTGTGAATAATTGAGAAACCTTTTAAAACCATTCCTTTTTTATTTTTCATT
ATTGCTTGTAAAGCGAAAATGACCAAAACATAAATTACAGAAGTTGAGAATGGGAATACA
TAACTTGACAGTGGAGTTACACCACTTTCCCAACGAAAGTTGGCGGTATATTGATCAAAT
GCAATGAGATAATTTTTTACAATATCCATCATAAAACGGGCTCTTTATTTTGGTCGGACG
CGTGGGTCGACCTGCAGGCATGCAAGCTTGGXXXXXXXXXX
sequence update 1999. 1.12
Translated Amino Acid sequence 
nlm*fgdsnntlkhe*nyllvyttnyqltigheaiamllvplpydgkyakr*lafslklk
*QCQPIHSILISRKCRSKNQFYLVQIDLIVRIPMKMHFALNIVGMLHT*hltslkmii*l
n*cce*lrnllkpflfyfslllvkrk*pkhklqklrmgihnltvelhhfpneswryidqm
q*dnflqyps*nglfilvgrvgrpagmqa---
Translated Amino Acid sequence (All Frames) 
Frame A:
epnvvwr***yikt*iklftsvhhqlptnhws*shchvtgtiai*wkickkmigfffkak
mtvstns*yfdk*km*iqkpilpctd*ldcshtnenalcskycwyaayitpdiiendnii
klml*iiekpfktipflffiiackakmtkt*itevengnt*ldsgvtplsqrklavy*sn
amr*fftisiikralyfgrtrgstcrhasl---


Frame B:
nlm*fgdsnntlkhe*nyllvyttnyqltigheaiamllvplpydgkyakr*lafslklk
*QCQPIHSILISRKCRSKNQFYLVQIDLIVRIPMKMHFALNIVGMLHT*hltslkmii*l
n*cce*lrnllkpflfyfslllvkrk*pkhklqklrmgihnltvelhhfpneswryidqm
q*dnflqyps*nglfilvgrvgrpagmqa---


Frame C:
t*csleiviih*nmnktiy*ctppttn*plvmkplpcywyhchmmenmqkddwlfl*s*n
dsvnqfivf**venvdpktnstlyrlt*lfayq*kctll*illvccihnt*hh*k**yn*
invvnn*etf*nhsffifhycl*sendqninyrs*eweyit*qwsyttfptkvggilikc
neiifynihhktgslfwsdawvdlqackl---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA205 (SLA205Q) /CSM/SL/SLA2-A/SLA205Q.Seq.d/                       1179   0.0
VFI293 (VFI293Q) /CSM/VF/VFI2-D/VFI293Q.Seq.d/                       1055   0.0
VFA343 (VFA343Q) /CSM/VF/VFA3-B/VFA343Q.Seq.d/                       1047   0.0
VFA435 (VFA435Q) /CSM/VF/VFA4-B/VFA435Q.Seq.d/                       1039   0.0
SLC388 (SLC388Q) /CSM/SL/SLC3-D/SLC388Q.Seq.d/                        789   0.0
SLD183 (SLD183Q) /CSM/SL/SLD1-D/SLD183Q.Seq.d/                        482   e-135
VSB578 (VSB578Q) /CSM/VS/VSB5-D/VSB578Q.Seq.d/                        281   6e-75
SLB264 (SLB264Q) /CSM/SL/SLB2-C/SLB264Q.Seq.d/                        119   5e-26
SLH682 (SLH682Q) /CSM/SL/SLH6-D/SLH682Q.Seq.d/                         52   1e-05
SLH429 (SLH429Q) /CSM/SL/SLH4-B/SLH429Q.Seq.d/                         52   1e-05
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF187070|AF187070.1 Dictyostelium discoideum steroid isomerase (SRE1) mRNA, complete cds.   232   5e-57  1
BD181437|BD181437.1 Method for synthesizing the nucleic acid.      52   3e-11  2
BD091650|BD091650.1 Method for synthesizing the nucleic acid.      52   3e-11  2
BD083024|BD083024.1 Method of detecting difference between gene sequences.    52   3e-11  2
BD181439|BD181439.1 Method for synthesizing the nucleic acid.      52   5e-11  2
BD091652|BD091652.1 Method for synthesizing the nucleic acid.      52   5e-11  2
BD083026|BD083026.1 Method of detecting difference between gene sequences.    52   5e-11  2
BD181438|BD181438.1 Method for synthesizing the nucleic acid.      52   5e-11  2
BD091651|BD091651.1 Method for synthesizing the nucleic acid.      52   5e-11  2
BD083025|BD083025.1 Method of detecting difference between gene sequences.    52   5e-11  2
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CS020179_1(CS020179|pid:none) Sequence 133 from Patent WO2005012...   144   2e-33
CS020177_1(CS020177|pid:none) Sequence 131 from Patent WO2005012...   141   2e-32
AC117073_2(AC117073|pid:none) Dictyostelium discoideum chromosom...   103   4e-21
AF187070_1(AF187070|pid:none) Dictyostelium discoideum steroid i...   102   9e-21
AC116957_93(AC116957|pid:none) Dictyostelium discoideum chromoso...   102   1e-20
AE017343_12(AE017343|pid:none) Cryptococcus neoformans var. neof...    89   1e-16
AB449110_1(AB449110|pid:none) Mortierella alpina MAELO gene for ...    86   7e-16
AF268031_1(AF268031|pid:none) Mortierella alpina long chain fatt...    86   7e-16
CT005253_78(CT005253|pid:none) Leishmania major strain Friedlin,...    84   4e-15
AJ608934_1(AJ608934|pid:none) Gossypium hirsutum mRNA for long c...    83   7e-15
protein update 2009. 5.31
PSORT 

 psg: 0.86  gvh: 0.46  alm: 0.41  top: 0.63  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SLA205 is nuc
5' end seq. ID SLA205F
5' end seq. 
>SLA205F.Seq
GAACCTAATGTAGTTTGGAGATAGTAATAATACATTAAAACATGAATAAAACTATTTACT
AGTGTACACCACCAACTACCAACTAACCATTGGTCATGAAGCCATTGCCATGTTACTGGT
ACCATTGCCATATGATGGAAAATATGCAAAAAGATGATTGGCTTTTTCTTTAAAGCTAAA
ATGACAGTGTCAACCAATTCATAGTATTTTGATAAGTAGAAAATGTAGATCCAAAAACCA
ATTCTACCTTGTACAGATTGACTTGATTGTTCGCATACCAATGAAAATGCACTTTGCTCT
AAATATTGTTGGTATGCTGCATACATAACACCTGACATCATTGAAAATGATAATATAATT
AAATTAATGTTGTGAATAATTGAGAAACCTTTTAAAACCATTCCTTTTTTATTTTTCATT
ATTGCTTGTAAAGCGAAAATGACCAAAACATAAATTACAGAAGTTGAGAATGGGAATACA
TAACTTGACAGTGGAGTTACACCACTTTCCCAACGAAAGTTGGCGGTATATTGATCAAAT
GCAATGAGATAATTTTTTACAATATCCATCATAAAACGGGCTCTTTATTTTGGTCGGACG
CGTGGGTCGACCTGCAGGCATGCAAGCTTGG
Length of 5' end seq. 631
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -