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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA194
Library SL
(Link to library)
Clone ID SLA194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLA194Z
(Link to Original site)
Representative DNA sequence 
>SLA194 (SLA194Q) /CSM/SL/SLA1-D/SLA194Q.Seq.d/
XXXXXXXXXXAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTAT
CATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATA
CTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTT
CAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTA
CAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAG
CCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAA
GTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTC
CATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAG
CTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATC
sequence update 1997. 5.16
Translated Amino Acid sequence 
---ARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAAS
TIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASS
EPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSATS*ikl*
Translated Amino Acid sequence (All Frames) 
Frame A:
---ARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAAS
TIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASS
EPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSATS*ikl*


Frame B:
---qdhryhhhiaqlvqsyhqhvitle*fvfkyqaivpildshvahliqfvfihqllllq
plqqlhqlsqlqplqllqvqqlvelqlvvqllivvllpqpivalpphhhqavllqvplqv
nhqvaplqvvlhpllqvalhplpqvvlhhhqlqvqlhhqlqaqkaqkahqplhk*nfd


Frame C:
---kttgttttllnlcraiism*srwndlysstkqlyqy*ipmlpissnlyssinyccfn
hcnncincrnynlcnycrynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk*
tik*rrfk*csilcfk*rsilclk*csiiisfkfsciiscklrklrklishfinktli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                       1047   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                       1047   0.0
SLI293 (SLI293Q) /CSM/SL/SLI2-D/SLI293Q.Seq.d/                       1047   0.0
SLI237 (SLI237Q) /CSM/SL/SLI2-B/SLI237Q.Seq.d/                       1047   0.0
SLG857 (SLG857Q) /CSM/SL/SLG8-C/SLG857Q.Seq.d/                       1047   0.0
SLG852 (SLG852Q) /CSM/SL/SLG8-C/SLG852Q.Seq.d/                       1047   0.0
SLG851 (SLG851Q) /CSM/SL/SLG8-C/SLG851Q.Seq.d/                       1047   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                       1047   0.0
SLG731 (SLG731Q) /CSM/SL/SLG7-B/SLG731Q.Seq.d/                       1047   0.0
SLG257 (SLG257Q) /CSM/SL/SLG2-C/SLG257Q.Seq.d/                       1047   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.  1047   0.0    3
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   190   1e-44  1
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A).    36   0.14   2
AK100095|AK100095.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence.    36   0.83   2
AL110484|AL110484.2 Caenorhabditis elegans YAC Y38E10A.            44   2.0    1
CB682568|CB682568.1 OSJNEf10A23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA clone OSJNEf10A23 3', mRNA sequence.    44   2.0    1
CB628070|CB628070.1 ---.    44   2.0    1
CB645342|CB645342.1 ---.    44   2.0    1
AY344488|AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.    44   2.0    1
AK072391|AK072391.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023077L03, full insert sequence.    44   2.0    1
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        74   2e-12
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    74   2e-12
EU247178_1(EU247178|pid:none) Lycosa singoriensis clone LSsin992...    33   4.5
protein update 2009. 1.19
PSORT 

 psg: 0.80  gvh: 0.43  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.57  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic

>> prediction for SLA194 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA194Z
3' end seq. 
>SLA194Z.Seq
----------AGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTAT
CATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATA
CTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTT
CAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTA
CAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAG
CCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAA
GTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTC
CATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAG
CTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATC
Length of 3' end seq. 528
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -