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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA193
Library SL
(Link to library)
Clone ID SLA193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLA193E
(Link to Original site)
Representative DNA sequence 
>SLA193 (SLA193Q) /CSM/SL/SLA1-D/SLA193Q.Seq.d/
GTATGTCAAATGATTCCCCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACATA
CCCCCTGGCATACCACCACCTTGTGGCATACCAGGTGGTATGTCAAATGATTCCCCAAAG
AGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCT
ATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATA
GTACACATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 5.16
Translated Amino Acid sequence 
msndspkssnnkvdeld*htpwhtttlwhtrwyvk*FPKEFKQQSRRIRLTEFFRGKHLY
QIDFLKNNKLVKSIKLLIYSTH*kkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vcqmipqrvqttk*tn*idippgipppcgipggmsndspkssnnkvdeld*rnfseenis
ik*is*kiis**nq*sfsyivhikkkkkkkkkkkkkk


Frame B:
yvk*fpkefkqqsrrirltyplayhhlvayqvvcqmipqrvqttk*tn*idgifqrktsl
snrflkk**vskinkashi*ytlkkkkkkkkkkkkkk


Frame C:
msndspkssnnkvdeld*htpwhtttlwhtrwyvk*FPKEFKQQSRRIRLTEFFRGKHLY
QIDFLKNNKLVKSIKLLIYSTH*kkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA193 (SLA193Q) /CSM/SL/SLA1-D/SLA193Q.Seq.d/                        494   e-139
VSF348 (VSF348Q) /CSM/VS/VSF3-B/VSF348Q.Seq.d/                        307   5e-83
VSA155 (VSA155Q) /CSM/VS/VSA1-C/VSA155Q.Seq.d/                        307   5e-83
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                        307   5e-83
VFL101 (VFL101Q) /CSM/VF/VFL1-A/VFL101Q.Seq.d/                        307   5e-83
SSK478 (SSK478Q) /CSM/SS/SSK4-D/SSK478Q.Seq.d/                        307   5e-83
SSK476 (SSK476Q) /CSM/SS/SSK4-D/SSK476Q.Seq.d/                        307   5e-83
SSJ888 (SSJ888Q) /CSM/SS/SSJ8-D/SSJ888Q.Seq.d/                        307   5e-83
SSI563 (SSI563Q) /CSM/SS/SSI5-C/SSI563Q.Seq.d/                        307   5e-83
SSF159 (SSF159Q) /CSM/SS/SSF1-C/SSF159Q.Seq.d/                        307   5e-83
own update 2002.12.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   307   4e-80  1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   307   4e-80  1
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   0.16   5
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    38   0.65   5
AC084181|AC084181.1 Homo sapiens clone RP11-137A17, LOW-PASS SEQUENCE SAMPLING.    36   0.90   2
BG785682|BG785682.1 SEAUMC005639 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PC_0026_B1_A06_MR 5', mRNA sequence.    34   0.92   2
AC025527|AC025527.2 Homo sapiens clone RP11-657F23, WORKING DRAFT SEQUENCE, 28 unordered pieces.    36   1.0    3
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    44   1.0    1
AE011082|AE011082.1 Methanosarcina acetivorans str. C2A, section 427 of 534 of the complete genome.    44   1.0    1
CB823247|CB823247.1 EST 4471 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh005m14 3', mRNA sequence.    44   1.0    1
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...    38   0.097
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...    38   0.097
protein update 2009. 3. 3
PSORT 

 psg: 0.56  gvh: 0.15  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLA193 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA193E
Full length Seq. 
>SLA193E.Seq
GTATGTCAAATGATTCCCCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACATA
CCCCCTGGCATACCACCACCTTGTGGCATACCAGGTGGTATGTCAAATGATTCCCCAAAG
AGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCT
ATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATA
GTACACATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 293