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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA175
Library SL
(Link to library)
Clone ID SLA175
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SLA175E
(Link to Original site)
Representative DNA sequence 
>SLA175 (SLA175Q) /CSM/SL/SLA1-D/SLA175Q.Seq.d/
GAAATTTGTTTATTAGAACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCA
CCAGGAACTAAATGTGTTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATA
ACTCCATATTAAATTTAAATAAAAAAAAAATATATATTTTCATTTTTCAAAAAAAAAAAA
AAAA
sequence update 1997. 5.29
Translated Amino Acid sequence 
EICLLEQSRCAPLCEFVKCSPGTKCVADTTGIPVCLPNGITPY*i*ikkkyifsffkkkk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
EICLLEQSRCAPLCEFVKCSPGTKCVADTTGIPVCLPNGITPY*i*ikkkyifsffkkkk
k


Frame B:
kfvy*nnhvvphyvnl*nvhqelnvlliqlefqfvyqme*lhikfk*kkniyfhfskkkk
k


Frame C:
nlfirtitlcpim*ickmftrn*mcc*ynwnsslftkwnnsilnlnkkkiyififqkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK509 (SSK509Q) /CSM/SS/SSK5-A/SSK509Q.Seq.d/                        278   3e-74
SLI671 (SLI671Q) /CSM/SL/SLI6-C/SLI671Q.Seq.d/                        278   3e-74
SLI350 (SLI350Q) /CSM/SL/SLI3-C/SLI350Q.Seq.d/                        278   3e-74
SLI220 (SLI220Q) /CSM/SL/SLI2-A/SLI220Q.Seq.d/                        278   3e-74
SLH875 (SLH875Q) /CSM/SL/SLH8-D/SLH875Q.Seq.d/                        278   3e-74
SLG207 (SLG207Q) /CSM/SL/SLG2-A/SLG207Q.Seq.d/                        278   3e-74
SLF408 (SLF408Q) /CSM/SL/SLF4-A/SLF408Q.Seq.d/                        278   3e-74
SLE835 (SLE835Q) /CSM/SL/SLE8-B/SLE835Q.Seq.d/                        278   3e-74
SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/                        278   3e-74
SLD330 (SLD330Q) /CSM/SL/SLD3-B/SLD330Q.Seq.d/                        278   3e-74
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC046202|AC046202.5 Homo sapiens chromosome 18, clone RP11-318I15, complete sequence.    38   0.096  4
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    32   0.13   8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    30   0.15   9
AE003591|AE003591.4 Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete sequence.    34   0.21   7
AC100688|AC100688.1 Mus musculus clone RP23-168G17, LOW-PASS SEQUENCE SAMPLING.    36   0.37   2
AE010280|AE010280.1 Pyrococcus furiosus DSM 3638, section 155 of 173 of the complete genome.    34   0.38   2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    30   0.51   8
BP130195|BP130195.1 Nicotiana tabacum cDNA, clone: BY2137, primer: M13 forward, sequence 1.    44   0.61   1
AE017199|AE017199.1 Nanoarchaeum equitans Kin4-M, complete genome.    34   0.73   9
AC147086|AC147086.1 Pan troglodytes chromosome 7 clone RP43-58O23, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   0.85   7
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    96   5e-19
protein update 2009. 3. 3
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLA175 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLA175E
Full length Seq. 
>SLA175E.Seq
GAAATTTGTTTATTAGAACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCA
CCAGGAACTAAATGTGTTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATA
ACTCCATATTAAATTTAAATAAAAAAAAAATATATATTTTCATTTTTCAAAAAAAAAAAA
AAAA
Length of full length seq. 184