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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA166
Library SL
(Link to library)
Clone ID SLA166
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01084-1|Contig-U16394-1
Original site URL
Representative seq. ID SLA166P
(Link to Original site)
Representative DNA sequence 
>SLA166 (SLA166Q) /CSM/SL/SLA1-C/SLA166Q.Seq.d/
GTAATAGTTTACCATCATCACCAAATGGTGCAACTAAAATTAAGAAATCCAATTCGTCAA
ATTTAAAGAAATCATCAACTTCTGAAAGATTAAATGGTAAAGTTAGTAATAATAGTAATA
TATATAATGATGACATTCAAATTGAATTCACTAAAGATGATGTGCCATTCTCAAAACAAA
CATTAAATAATCTTGGCTTATTATTAAATAATCATACAACTCGTAGAATCTTTATTCAAT
TTTCAGAGAAGGAACATTCACATAATCATGTTTTGTTTTGGCAAGAAACTAAAGAATACA
AAGAGAAATTCATTGAAATTAATCAAGAACAATTATCAACTCAACCAGAACAACAACAAG
CAACAACTTCAACATCCTCTTCAACTTCTTCTTTACAACCACAACAATCACAACAACAAC
AATCATCTTCATCTTCTTCCTCATCATCATCACAACAAAACTCAACACAACAATTATCTA
ATTTAGTTACTGATAATAATAATATAAATAATAATAATAGTAATAATAAXXXXXXXXXXG
AAAAATTACAAATAGACGTAGTCAATTTTTATCGGGTAATCGTGTTTCAAGAGAATCAAC
ACCAGATGATAATACAGATGATGAAGAAAATGAAATTGCAATGATGCAAAAATCCAATCT
TAAAAACTGTCTTTATATATTTGATAAATACCTAACTCCATCGTCCGAACTTGAGGTGAA
TTTAGATTTCAAAACCTTTATTGAAATAAAGAAAAAAATTGATCAAAACCAAATCACTGT
AAATATCTTTGAAAAATCCCAAAAAGAAATCCAAGAAGTTATTGCAAATGACTCTTATTT
CCGTTATAAGTCTTCAACAACATTTAAATATCTATTAAATTGTGCTGAACAATTTGAAAA
AGATAATAGTTTAATACCTTCATCTGATGATAAACCAAAATTAAAATCTAGAAAATCAAA
GTTTTTTTGTATGTAATAATAATAAAAATTTAAAAACTAATA
sequence update 1999. 1.12
Translated Amino Acid sequence 
NSLPSSPNGATKIKKSNSSNLKKSSTSERLNGKVSNNSNIYNDDIQIEFTKDDVPFSKQT
LNNLGLLLNNHTTRRIFIQFSEKEHSHNHVLFWQETKEYKEKFIEINQEQLSTQPEQQQA
TTSTSSSTSSLQPQQSQQQQSSSSSSSSSSQQNSTQQLSNLVTDNNNINNNNSNN---

---KITNRRSQFLSGNRVSRESTPDDNTDDEENEIAMMQKSNLKNCLYIFDKYLTPSSEL
EVNLDFKTFIEIKKKIDQNQITVNIFEKSQKEIQEVIANDSYFRYKSSTTFKYLLNCAEQ
FEKDNSLIPSSDDKPKLKSRKSKFFCM****kfkn*
Translated Amino Acid sequence (All Frames) 
Frame A:
vivyhhhqmvqlklrnpirqi*rnhqllkd*mvklviiviyimmtfklnslkmmchsqnk
h*iilayy*iiiqlveslfnfqrrnihiimfcfgkklkntkrnslkliknnyqlnqnnnk
qqlqhplqlllynhnnhnnnnhlhllphhhhnktqhnnyli*lliiii*iiiivii---

---eklqidvvnfyrvivfqenqhqmiiqmmkkmklq*cknpilktvfiylint*lhrpn
lr*i*iskpllk*rkkliktksl*islknpkkkskkllqmtlisvislqqhlniy*ivln
nlkkiiv*ylhlminqn*nlenqsffvcnnnknlktn

Frame B:
**ftiitkwcn*n*eiqfvkfkeiinf*kikw*s*****yi***hsn*ih*r*cailktn
ik*swliik*syns*nlysifregtft*scfvlarn*riqreih*n*srtiinstrttts
nnfnilfnfffttttittttiififfliiittklnttii*fsy****yk*******---

---knyk*t*sifig*scfkrintr**yr**rk*ncndakiqs*klslyi**ipnsivrt
*gefrfqnly*nkekn*skpnhckyl*kipkrnprsyck*llfpl*vfnni*isiklc*t
i*kr**fntfi***tkiki*kikvflyviiiki*kli

Frame C:
NSLPSSPNGATKIKKSNSSNLKKSSTSERLNGKVSNNSNIYNDDIQIEFTKDDVPFSKQT
LNNLGLLLNNHTTRRIFIQFSEKEHSHNHVLFWQETKEYKEKFIEINQEQLSTQPEQQQA
TTSTSSSTSSLQPQQSQQQQSSSSSSSSSSQQNSTQQLSNLVTDNNNINNNNSNN---

---KITNRRSQFLSGNRVSRESTPDDNTDDEENEIAMMQKSNLKNCLYIFDKYLTPSSEL
EVNLDFKTFIEIKKKIDQNQITVNIFEKSQKEIQEVIANDSYFRYKSSTTFKYLLNCAEQ
FEKDNSLIPSSDDKPKLKSRKSKFFCM****kfkn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA166 (SLA166Q) /CSM/SL/SLA1-C/SLA166Q.Seq.d/                        835   0.0
SSM279 (SSM279Q) /CSM/SS/SSM2-D/SSM279Q.Seq.d/                        825   0.0
SLA875 (SLA875Q) /CSM/SL/SLA8-D/SLA875Q.Seq.d/                        819   0.0
SSD435 (SSD435Q) /CSM/SS/SSD4-B/SSD435Q.Seq.d/                        791   0.0
SSL195 (SSL195Q) /CSM/SS/SSL1-D/SSL195Q.Seq.d/                        733   0.0
SSC815 (SSC815Q) /CSM/SS/SSC8-A/SSC815Q.Seq.d/                        666   0.0
VFK439 (VFK439Q) /CSM/VF/VFK4-B/VFK439Q.Seq.d/                         46   0.001
VFI445 (VFI445Q) /CSM/VF/VFI4-B/VFI445Q.Seq.d/                         46   0.001
VFG687 (VFG687Q) /CSM/VF/VFG6-D/VFG687Q.Seq.d/                         46   0.001
SSG123 (SSG123Q) /CSM/SS/SSG1-A/SSG123Q.Seq.d/                         46   0.001
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    46   2e-15  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   6e-13  18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44   2e-12  20
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    44   5e-12  16
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    44   8e-12  19
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44   9e-12  19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           52   1e-11  17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   1e-11  20
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   3e-11  17
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    36   3e-11  14
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169_2(U23169|pid:none) Caenorhabditis elegans cosmid C29H12, ...    46   0.002
(Q18312) RecName: Full=Regulator of G-protein signaling rgs-3;  ...    46   0.002
T15700(T15700) hypothetical protein C29H12.3 - Caenorhabditis el...    46   0.002
(Q4L0E8) RecName: Full=Regulator of G-protein signaling 18;     ...    41   0.071
BC154780_1(BC154780|pid:none) Danio rerio regulator of G-protein...    40   0.12
AY423029_1(AY423029|pid:none) Danio rerio regulator of G-protein...    40   0.12
(Q2M5E4) RecName: Full=Regulator of G-protein signaling 21;     ...    39   0.21
CP001160_231(CP001160|pid:none) Thalassiosira pseudonana CCMP133...    39   0.21
BC141786_1(BC141786|pid:none) Danio rerio regulator of G-protein...    39   0.27
BC084852_1(BC084852|pid:none) Xenopus laevis hypothetical LOC495...    39   0.27
protein update 2009. 5.31
PSORT 

 psg: 0.77  gvh: 0.25  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SLA166 is nuc
5' end seq. ID SLA166F
5' end seq. 
>SLA166F.Seq
GTAATAGTTTACCATCATCACCAAATGGTGCAACTAAAATTAAGAAATCCAATTCGTCAA
ATTTAAAGAAATCATCAACTTCTGAAAGATTAAATGGTAAAGTTAGTAATAATAGTAATA
TATATAATGATGACATTCAAATTGAATTCACTAAAGATGATGTGCCATTCTCAAAACAAA
CATTAAATAATCTTGGCTTATTATTAAATAATCATACAACTCGTAGAATCTTTATTCAAT
TTTCAGAGAAGGAACATTCACATAATCATGTTTTGTTTTGGCAAGAAACTAAAGAATACA
AAGAGAAATTCATTGAAATTAATCAAGAACAATTATCAACTCAACCAGAACAACAACAAG
CAACAACTTCAACATCCTCTTCAACTTCTTCTTTACAACCACAACAATCACAACAACAAC
AATCATCTTCATCTTCTTCCTCATCATCATCACAACAAAACTCAACACAACAATTATCTA
ATTTAGTTACTGATAATAATAATATAAATAATAATAATAGTAATAATAA----------
Length of 5' end seq. 529
3' end seq. ID SLA166Z
3' end seq. 
>SLA166Z.Seq
----------GAAAAATTACAAATAGACGTAGTCAATTTTTATCGGGTAATCGTGTTTCA
AGAGAATCAACACCAGATGATAATACAGATGATGAAGAAAATGAAATTGCAATGATGCAA
AAATCCAATCTTAAAAACTGTCTTTATATATTTGATAAATACCTAACTCCATCGTCCGAA
CTTGAGGTGAATTTAGATTTCAAAACCTTTATTGAAATAAAGAAAAAAATTGATCAAAAC
CAAATCACTGTAAATATCTTTGAAAAATCCCAAAAAGAAATCCAAGAAGTTATTGCAAAT
GACTCTTATTTCCGTTATAAGTCTTCAACAACATTTAAATATCTATTAAATTGTGCTGAA
CAATTTGAAAAAGATAATAGTTTAATACCTTCATCTGATGATAAACCAAAATTAAAATCT
AGAAAATCAAAGTTTTTTTGTATGTAATAATAATAAAAATTTAAAAACTAATA
Length of 3' end seq. 463
Connected seq. ID SLA166P
Connected seq. 
>SLA166P.Seq
GTAATAGTTTACCATCATCACCAAATGGTGCAACTAAAATTAAGAAATCCAATTCGTCAA
ATTTAAAGAAATCATCAACTTCTGAAAGATTAAATGGTAAAGTTAGTAATAATAGTAATA
TATATAATGATGACATTCAAATTGAATTCACTAAAGATGATGTGCCATTCTCAAAACAAA
CATTAAATAATCTTGGCTTATTATTAAATAATCATACAACTCGTAGAATCTTTATTCAAT
TTTCAGAGAAGGAACATTCACATAATCATGTTTTGTTTTGGCAAGAAACTAAAGAATACA
AAGAGAAATTCATTGAAATTAATCAAGAACAATTATCAACTCAACCAGAACAACAACAAG
CAACAACTTCAACATCCTCTTCAACTTCTTCTTTACAACCACAACAATCACAACAACAAC
AATCATCTTCATCTTCTTCCTCATCATCATCACAACAAAACTCAACACAACAATTATCTA
ATTTAGTTACTGATAATAATAATATAAATAATAATAATAGTAATAATAA----------G
AAAAATTACAAATAGACGTAGTCAATTTTTATCGGGTAATCGTGTTTCAAGAGAATCAAC
ACCAGATGATAATACAGATGATGAAGAAAATGAAATTGCAATGATGCAAAAATCCAATCT
TAAAAACTGTCTTTATATATTTGATAAATACCTAACTCCATCGTCCGAACTTGAGGTGAA
TTTAGATTTCAAAACCTTTATTGAAATAAAGAAAAAAATTGATCAAAACCAAATCACTGT
AAATATCTTTGAAAAATCCCAAAAAGAAATCCAAGAAGTTATTGCAAATGACTCTTATTT
CCGTTATAAGTCTTCAACAACATTTAAATATCTATTAAATTGTGCTGAACAATTTGAAAA
AGATAATAGTTTAATACCTTCATCTGATGATAAACCAAAATTAAAATCTAGAAAATCAAA
GTTTTTTTGTATGTAATAATAATAAAAATTTAAAAACTAATA
Length of connected seq. 992
Full length Seq ID -
Full length Seq. -
Length of full length seq. -