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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA136
Library SL
(Link to library)
Clone ID SLA136
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12124-1
Original site URL
Representative seq. ID SLA136P
(Link to Original site)
Representative DNA sequence 
>SLA136 (SLA136Q) /CSM/SL/SLA1-B/SLA136Q.Seq.d/
CATTAAAAAAGTTTTCTATTAAAGGAGCGACAACAAGAATAAGGGATGGAGTTGGATTAT
ATTTTGGTTTAAACGAAGAACAAATACAACAACAACAACAACAACAACAACAACAACAAC
AGCAAAATAGTGATAATAATCAAGCCGACAATAACAATAGTAGTAATAGTAATAATAATA
ATAGTTATTATGAAGAAGATGAACCATATTGGATGAAAGATGATTTTTGGGAGAAAGCAC
CAAGATATAATAGAGGTAATGATATTGAGATGGATAGATATGAATCACCACCAGTTTATT
CACCGCCACAAAATAATCAAAACAAAGGCAATGGAGCAACATTAAATTCAACAGATTATT
ATCCAAGTGATGTGGTAACACCATCAGGAGAAACAGTAGCAAGTGGTGGTGGTGGTGGTG
GTGGTGGTAATCCATATTTGGTAGGTGGCGATGATATGAATGATAAAATGATGATGGGTG
GTGAAGGAGATGATGATGATGATGGAGCAACTCGTAGAGGTAGAGGTAGAGGTAGGGGTA
GAGGCAGAGGCAGACCAGGACCAAATAATCAAGGAGGCGGTGGTGGTGGAGGTCGTACAG
ATGGCAAGAAACCATTCCGTCCATCAXXXXXXXXXXACAGATTTAATCAGAAATTGGAGT
GTTTTAGCTAAACCTTGGTTAAATTTTGGTTCACTATTATTTAGTATTATAACTACTTTT
GCTGTTGGTTTATTTTTACCAGGTGTTGATAATTTTGCGCATTTAGGTGGTTTTATTGCA
GGTATTTTAACAGCAGCAATTTTCTTGCCATCATTAACACCAAAGAGAGCAATTGGAAAA
CGTTTACTTTTACTTATGATTGTAATTCCATTGACTGTAGCATTATTTGTAGCATTATTT
GTTGTATTTTATAAAAATATAGATGCAGATGAATGGTGTTTTGGTTGTAAATATATAACA
TGTCTTCAAGTATTAAGTTGGTGTAAGACTTAAAAAAATTAAAGATATAACATTTAATTT
TTACA
sequence update 1999. 1.12
Translated Amino Acid sequence 
LKKFSIKGATTRIRDGVGLYFGLNEEQIQQQQQQQQQQQQQNSDNNQADNNNSSNSNNNN
SYYEEDEPYWMKDDFWEKAPRYNRGNDIEMDRYESPPVYSPPQNNQNKGNGATLNSTDYY
PSDVVTPSGETVASGGGGGGGGNPYLVGGDDMNDKMMMGGEGDDDDDGATRRGRGRGRGR
GRGRPGPNNQGGGGGGGRTDGKKPFRPS---

---TDLIRNWSVLAKPWLNFGSLLFSIITTFAVGLFLPGVDNFAHLGGFIAGILTAAIFL
PSLTPKRAIGKRLLLLMIVIPLTVALFVALFVVFYKNIDADEWCFGCKYITCLQVLSWCK
T*kn*ryni*fl
Translated Amino Acid sequence (All Frames) 
Frame A:
h*ksfllkerqqe*gmeldyilv*tknkynnnnnnnnnnnskiviiikptitivviviii
ivimkkmnhig*kmifgrkhqdiievmilrwidmnhhqfihrhkiiktkameqh*iqqii
iqvmw*hhqekq*qvvvvvvvvvihiw*vami*mik**wvvkemmmmmeqlvevevevgv
eaeadqdqiikeavvvevvqmarnhsvh---

---TDLIRNWSVLAKPWLNFGSLLFSIITTFAVGLFLPGVDNFAHLGGFIAGILTAAIFL
PSLTPKRAIGKRLLLLMIVIPLTVALFVALFVVFYKNIDADEWCFGCKYITCLQVLSWCK
T*kn*ryni*fl

Frame B:
ikkvfy*rsdnknkgwswiifwfkrrtnttttttttttttak****ssrq*q********
*ll*rr*tilder*flgestki**r**y*dg*i*ittslftatk*skqrqwsnikfnrll
sk*cgntirrnsskwwwwwwww*sifgrwr*ye**nddgw*rr****wsns*r*r*r*g*
rqrqtrtk*srrrwwwrsyrwqetipsi---

---qi*seigvf*lnlg*ilvhyylvl*lllllvyfyqvliilri*vvllqvf*qqqfsc
hh*hqreqlenvyfyl*l*fh*l*hyl*hyllyfiki*mqmngvlvvni*hvfky*vgvr
lkkikditfnfy

Frame C:
LKKFSIKGATTRIRDGVGLYFGLNEEQIQQQQQQQQQQQQQNSDNNQADNNNSSNSNNNN
SYYEEDEPYWMKDDFWEKAPRYNRGNDIEMDRYESPPVYSPPQNNQNKGNGATLNSTDYY
PSDVVTPSGETVASGGGGGGGGNPYLVGGDDMNDKMMMGGEGDDDDDGATRRGRGRGRGR
GRGRPGPNNQGGGGGGGRTDGKKPFRPS---

---rfnqklecfs*tlvkfwftii*yynyfccwfiftrc**fcafrwfycryfnssnfla
iintkesnwktftftydcnsidcsiicsiiccil*kyrcr*mvfwl*iynmsssiklv*d
lkklki*hlift
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA136 (SLA136Q) /CSM/SL/SLA1-B/SLA136Q.Seq.d/                        932   0.0
SLI236 (SLI236Q) /CSM/SL/SLI2-B/SLI236Q.Seq.d/                        698   0.0
SHG510 (SHG510Q) /CSM/SH/SHG5-A/SHG510Q.Seq.d/                        539   e-152
SFD377 (SFD377Q) /CSM/SF/SFD3-D/SFD377Q.Seq.d/                        480   e-134
CHC468 (CHC468Q) /CSM/CH/CHC4-C/CHC468Q.Seq.d/                        458   e-128
SFJ204 (SFJ204Q) /CSM/SF/SFJ2-A/SFJ204Q.Seq.d/                        440   e-122
CHN491 (CHN491Q) /CSM/CH/CHN4-D/CHN491Q.Seq.d/                         54   4e-06
CHH536 (CHH536Q) /CSM/CH/CHH5-B/CHH536Q.Seq.d/                         54   4e-06
SSM618 (SSM618Q) /CSM/SS/SSM6-A/SSM618Q.Seq.d/                         40   0.065
SSJ702 (SSJ702Q) /CSM/SS/SSJ7-A/SSJ702Q.Seq.d/                         40   0.065
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC102195|AC102195.4 Mus musculus clone RP24-430B21, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    68   3e-07  1
AC102135|AC102135.11 Mus musculus chromosome 18, clone RP23-253J5, complete sequence.    68   3e-07  1
AC123139|AC123139.4 Rattus norvegicus clone CH230-11K3, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    54   5e-07  2
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  46   2e-06  15
AC147129|AC147129.1 Mus musculus chromosome UNK clone RP24-531L5, WORKING DRAFT SEQUENCE, 7 unordered pieces.    58   2e-06  8
AC125522|AC125522.2 Mus musculus chromosome UNK clone RP24-363I16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    58   2e-06  9
AC118646|AC118646.3 Mus musculus clone RP24-116A18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    64   4e-06  1
AC132695|AC132695.3 Rattus norvegicus clone CH230-141I19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    62   2e-05  1
AC137301|AC137301.1 Rattus norvegicus clone CH230-unknown, WORKING DRAFT SEQUENCE, 1 ordered piece.    62   2e-05  1
AL772335|AL772335.5 Mouse DNA sequence from clone RP23-415F19 on chromosome 4.    58   3e-05  8
dna update 2004. 1. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM434817_3(AM434817|pid:none) Vitis vinifera contig VV78X099660....    65   4e-09
AM439771_2(AM439771|pid:none) Vitis vinifera contig VV78X072918....    64   6e-09
AK061038_1(AK061038|pid:none) Oryza sativa Japonica Group cDNA c...    64   1e-08
AC079029_15(AC079029|pid:none) Oryza sativa chromosome 10 BAC OS...    64   1e-08
(Q6GMF8) RecName: Full=Rhomboid family member 1;  &BC074097_1(BC...    62   2e-08
BT059254_1(BT059254|pid:none) Salmo salar clone ssal-rgf-536-225...    61   5e-08
(A0JPA1) RecName: Full=Rhomboid family member 2;  &BC127321_1(BC...    60   9e-08
BC023469_1(BC023469|pid:none) Mus musculus rhomboid family 1 (Dr...    60   9e-08
AY016023_5(AY016023|pid:none) Sphoeroides nephelus alpha globin ...    60   1e-07
(Q96CC6) RecName: Full=Rhomboid family member 1; AltName: Full=p...    59   2e-07
protein update 2009. 5.31
PSORT 

 psg: 0.49  gvh: 0.37  alm: 0.13  top: 0.37  tms: 0.20  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for SLA136 is end
5' end seq. ID SLA136F
5' end seq. 
>SLA136F.Seq
CATTAAAAAAGTTTTCTATTAAAGGAGCGACAACAAGAATAAGGGATGGAGTTGGATTAT
ATTTTGGTTTAAACGAAGAACAAATACAACAACAACAACAACAACAACAACAACAACAAC
AGCAAAATAGTGATAATAATCAAGCCGACAATAACAATAGTAGTAATAGTAATAATAATA
ATAGTTATTATGAAGAAGATGAACCATATTGGATGAAAGATGATTTTTGGGAGAAAGCAC
CAAGATATAATAGAGGTAATGATATTGAGATGGATAGATATGAATCACCACCAGTTTATT
CACCGCCACAAAATAATCAAAACAAAGGCAATGGAGCAACATTAAATTCAACAGATTATT
ATCCAAGTGATGTGGTAACACCATCAGGAGAAACAGTAGCAAGTGGTGGTGGTGGTGGTG
GTGGTGGTAATCCATATTTGGTAGGTGGCGATGATATGAATGATAAAATGATGATGGGTG
GTGAAGGAGATGATGATGATGATGGAGCAACTCGTAGAGGTAGAGGTAGAGGTAGGGGTA
GAGGCAGAGGCAGACCAGGACCAAATAATCAAGGAGGCGGTGGTGGTGGAGGTCGTACAG
ATGGCAAGAAACCATTCCGTCCATCA----------
Length of 5' end seq. 626
3' end seq. ID SLA136Z
3' end seq. 
>SLA136Z.Seq
----------ACAGATTTAATCAGAAATTGGAGTGTTTTAGCTAAACCTTGGTTAAATTT
TGGTTCACTATTATTTAGTATTATAACTACTTTTGCTGTTGGTTTATTTTTACCAGGTGT
TGATAATTTTGCGCATTTAGGTGGTTTTATTGCAGGTATTTTAACAGCAGCAATTTTCTT
GCCATCATTAACACCAAAGAGAGCAATTGGAAAACGTTTACTTTTACTTATGATTGTAAT
TCCATTGACTGTAGCATTATTTGTAGCATTATTTGTTGTATTTTATAAAAATATAGATGC
AGATGAATGGTGTTTTGGTTGTAAATATATAACATGTCTTCAAGTATTAAGTTGGTGTAA
GACTTAAAAAAATTAAAGATATAACATTTAATTTTTACA
Length of 3' end seq. 389
Connected seq. ID SLA136P
Connected seq. 
>SLA136P.Seq
CATTAAAAAAGTTTTCTATTAAAGGAGCGACAACAAGAATAAGGGATGGAGTTGGATTAT
ATTTTGGTTTAAACGAAGAACAAATACAACAACAACAACAACAACAACAACAACAACAAC
AGCAAAATAGTGATAATAATCAAGCCGACAATAACAATAGTAGTAATAGTAATAATAATA
ATAGTTATTATGAAGAAGATGAACCATATTGGATGAAAGATGATTTTTGGGAGAAAGCAC
CAAGATATAATAGAGGTAATGATATTGAGATGGATAGATATGAATCACCACCAGTTTATT
CACCGCCACAAAATAATCAAAACAAAGGCAATGGAGCAACATTAAATTCAACAGATTATT
ATCCAAGTGATGTGGTAACACCATCAGGAGAAACAGTAGCAAGTGGTGGTGGTGGTGGTG
GTGGTGGTAATCCATATTTGGTAGGTGGCGATGATATGAATGATAAAATGATGATGGGTG
GTGAAGGAGATGATGATGATGATGGAGCAACTCGTAGAGGTAGAGGTAGAGGTAGGGGTA
GAGGCAGAGGCAGACCAGGACCAAATAATCAAGGAGGCGGTGGTGGTGGAGGTCGTACAG
ATGGCAAGAAACCATTCCGTCCATCA----------ACAGATTTAATCAGAAATTGGAGT
GTTTTAGCTAAACCTTGGTTAAATTTTGGTTCACTATTATTTAGTATTATAACTACTTTT
GCTGTTGGTTTATTTTTACCAGGTGTTGATAATTTTGCGCATTTAGGTGGTTTTATTGCA
GGTATTTTAACAGCAGCAATTTTCTTGCCATCATTAACACCAAAGAGAGCAATTGGAAAA
CGTTTACTTTTACTTATGATTGTAATTCCATTGACTGTAGCATTATTTGTAGCATTATTT
GTTGTATTTTATAAAAATATAGATGCAGATGAATGGTGTTTTGGTTGTAAATATATAACA
TGTCTTCAAGTATTAAGTTGGTGTAAGACTTAAAAAAATTAAAGATATAACATTTAATTT
TTACA
Length of connected seq. 1015
Full length Seq ID -
Full length Seq. -
Length of full length seq. -