SLA118
Library SL
(Link to library)
Clone ID SLA118
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SLA118 (SLA118Q) /CSM/SL/SLA1-A/SLA118Q.Seq.d/
XXXXXXXXXXCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCTGTTGCCAA
CTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTAT
CGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATT
ACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATC
CCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAG
AAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAAC
CGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCA
CTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAA
GAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAA
AATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGC
TGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCA
ATAAATTATATTTCAGAGATTTACAAACTA
sequence update 1997. 5. 7
Translated Amino Acid sequence
---VNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLP
RKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTG
KTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKI
TLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*iifqrftn


Translated Amino Acid sequence (All Frames)
Frame A:
---ksmvvqsskkltlllptlkrpstslvslpkmn*smlsv*pkvkvsmvslkdgvsvny
qerpikv*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqp
vrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrk
slsnssippaslvtvfikplkirlnisasrnqdqlrlkfnklyfrdlqt


Frame B:
---sqwwfnrrks*lcccql*kdrqrhwclcrk*inrcyrcnqr*rfqwch*kmgcp*it
kkdp*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr
*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccpren
hsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsinyiseiykl


Frame C:
---VNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLP
RKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTG
KTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKI
TLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*iifqrftn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA118 (SLA118Q) /CSM/SL/SLA1-A/SLA118Q.Seq.d/ 1348 0.0
VFG611 (VFG611Q) /CSM/VF/VFG6-A/VFG611Q.Seq.d/ 1328 0.0
VFG417 (VFG417Q) /CSM/VF/VFG4-A/VFG417Q.Seq.d/ 1328 0.0
SFG771 (SFG771Q) /CSM/SF/SFG7-C/SFG771Q.Seq.d/ 1320 0.0
VFM481 (VFM481Q) /CSM/VF/VFM4-D/VFM481Q.Seq.d/ 1318 0.0
VFL717 (VFL717Q) /CSM/VF/VFL7-A/VFL717Q.Seq.d/ 1318 0.0
VFL402 (VFL402Q) /CSM/VF/VFL4-A/VFL402Q.Seq.d/ 1318 0.0
VFI836 (VFI836Q) /CSM/VF/VFI8-B/VFI836Q.Seq.d/ 1318 0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/ 1318 0.0
VFI571 (VFI571Q) /CSM/VF/VFI5-C/VFI571Q.Seq.d/ 1318 0.0

own update 2004. 7.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 892 0.0 2
CB890778|CB890778.1 taa53h06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 1e-18 3
CB889634|CB889634.1 taa39c02.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 2e-18 3
CF601988|CF601988.1 tac45d08.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:RL3_BOVIN P39872 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence. 60 2e-18 3
CD566466|CD566466.1 tac05h02.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CF778120|CF778120.1 tad20h10.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CF780491|CF780491.1 tad20h10.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CF601165|CF601165.1 tac45d08.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:RL3_BOVIN P39872 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence. 60 2e-18 3
CB888312|CB888312.1 taa90e07.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CB888732|CB888732.1 taa80g11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 3e-18 3
dna update 2004. 1. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 434 e-120
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib... 280 3e-74
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr... 279 5e-74
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM... 278 1e-73
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15... 278 1e-73
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 277 2e-73
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 277 2e-73
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei... 277 2e-73
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L... 276 3e-73
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407.... 276 3e-73
protein update 2009. 5.31
PSORT

psg: 0.82 gvh: 0.36 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.09 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SLA118 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA118Z
3' end seq.
>SLA118Z.Seq
NNNNNNNNNNCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCTGTTGCCAA
CTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTAT
CGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATT
ACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATC
CCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAG
AAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAAC
CGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCA
CTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAA
GAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAA
AATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGC
TGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCA
ATAAATTATATTTCAGAGATTTACAAACTA
Length of 3' end seq. 690
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -