>SLA117 (SLA117Q) /CSM/SL/SLA1-A/SLA117Q.Seq.d/
XXXXXXXXXXCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCAAATTACC
ATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGA
TTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCG
TATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACC
AGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCC
AATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAA
TCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGA
TGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCC
ACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACT
CATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATAAATCGAAAAAACAAAG
ATTTGAATAAATAATTAATAATAATAATAATATTCCTTTTGCTTAAAAA

---EPMHRNYYQPIQFKLPSFPDTSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRI
YIHPSLGYSGNAKRFKQQPDVNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANP
HAKGKVLLVKNNILTRVKDGGFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLI
NVNVKQWKKSVPNKSKKQRFE*iinnnnnipfa*k

Frame A:
---snqcietttnqsnsnyhhsqtlhyqshksmikpvslilnvsshsiihkp*vnmnpiv
stfilhsvtvvmqrdsnnnqmsmrkl*fwmamstmdi*iqfttvksvpniikpnltfpli
hmqkvkffwskity*lvskmvvslsp*sqcvavvitlishstftlplqihsqmklysnhs
lmlmlsngknqfqinrknkdlnk*liiiiiflllk


Frame B:
---rtna*kllptnpiqitiiprhfitnhtnr**nryl*fstfpriq*stshe*i*ilsy
lhssftrlqw*ckeiqtttrcq*esfdfgwqclrwtfksnlql*nlyrilsnqillfr*s
tckr*ssfgqk*hinscqrwwfhsllkanvlqws*lsyptllslypyksthk*sctpith
*c*c*amekissk*iektki*inn*****ysfclk


Frame C:
---EPMHRNYYQPIQFKLPSFPDTSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRI
YIHPSLGYSGNAKRFKQQPDVNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANP
HAKGKVLLVKNNILTRVKDGGFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLI
NVNVKQWKKSVPNKSKKQRFE*iinnnnnipfa*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA117 (SLA117Q) /CSM/SL/SLA1-A/SLA117Q.Seq.d/                       1179   0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/                       1176   0.0
CHC177 (CHC177Q) /CSM/CH/CHC1-D/CHC177Q.Seq.d/                       1174   0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                       1160   0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/                       1160   0.0
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/                       1160   0.0
CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/                       1160   0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/                       1154   0.0
AFN778 (AFN778Q) /CSM/AF/AFN7-D/AFN778Q.Seq.d/                       1154   0.0
CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/                       1152   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX897741|BX897741.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-273O13.    36   0.29   7
AL132975|AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.    46   0.60   1
BZ622217|BZ622217.1 ig77a07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig77a07 5', genomic survey sequence.    46   0.60   1
AC079567|AC079567.1 Mus musculus clone RP23-63L14, WORKING DRAFT SEQUENCE, 38 unordered pieces.    38   0.85   2
AP005892|AP005892.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16, WORKING DRAFT SEQUENCE, 1 ordered pieces.    32   1.2    2
BX682233|BX682233.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-177P5.    44   2.4    1
AL844887|AL844887.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   2.4    1
BZ357781|BZ357781.1 SALK_131235.56.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_131235.56.00.x, DNA sequence.    44   2.4    1
AC126376|AC126376.2 Homo sapiens chromosome 8 clone CTD-3079P18 map 8, LOW-PASS SEQUENCE SAMPLING.    36   3.7    2
AC096647|AC096647.1 Homo sapiens BAC clone RP11-2G16 from 2, complete sequence.    34   3.8    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    35   2.4
AF438165_8(AF438165|pid:none) Camelpox virus M-96 from Kazakhsta...    34   3.1
AY698061_1(AY698061|pid:none) Schistosoma mansoni nuclear recept...    34   4.0
EU546237_1(EU546237|pid:none) Simarouba berteroana voucher WT 14...    34   4.1
CP001130_1319(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c...    34   4.1
EU042882_1(EU042882|pid:none) Samadera indica voucher JTH 138 tr...    34   4.1
AL031745_89(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   5.3
EU042885_1(EU042885|pid:none) Simaba glabra voucher Ratter et al...    33   6.9
AM910989_21(AM910989|pid:none) Plasmodium knowlesi strain H chro...    33   9.1
AL939121_44(AL939121|pid:none) Streptomyces coelicolor A3(2) com...    33   9.1

 psg: 0.67  gvh: 0.36  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLA117 is nuc

>SLA117Z.Seq
NNNNNNNNNNCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCAAATTACC
ATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGA
TTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCG
TATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACC
AGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCC
AATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAA
TCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGA
TGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCC
ACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACT
CATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATAAATCGAAAAAACAAAG
ATTTGAATAAATAATTAATAATAATAATAATATTCCTTTTGCTTAAAAA