SLA115
Library SL
(Link to library)
Clone ID SLA115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SLA115 (SLA115Q) /CSM/SL/SLA1-A/SLA115Q.Seq.d/
XXXXXXXXXXCCCATTTTGGAACGTTTAACCAAAGCCTACAAAACCATTAAAAATCGGTA
ATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAAT
TCACTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATA
AACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATG
CTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATC
TTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCA
CAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAG
TTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAG
AGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTA
CTAATACAATCAACTATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAA
ATTACCAAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTGTTGA
TATTTGTTCATAATTA
sequence update 1997. 5. 7
Translated Amino Acid sequence
---pfwnv*PKPTKPLKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNK
LDISGGNFVEPTVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFT
NNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRST
NTINYGNTMPLSQGINFN*nyqkkktkcnlhninkrillifvhn


Translated Amino Acid sequence (All Frames)
Frame A:
---pfwnv*PKPTKPLKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNK
LDISGGNFVEPTVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFT
NNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRST
NTINYGNTMPLSQGINFN*nyqkkktkcnlhninkrillifvhn


Frame B:
---hfgtfnqslqnh*ksvihlkkvf**vhstpkallknslkvlkk*kskvvrsslvvin
sisvvetllnqpslplnmmlqs*rlnslfqfst**nskiltmllpgimkshkvshlpssq
tikrissngldlpdltvv*lt*m*lqtvlklvvplevkkrpevvenlaqtagnsiavvvl
iqstmvilchyhkvsiltkitkkkkpnvtyit*ikeyc*ylfii


Frame C:
---ilerltkayktiknr*st*rrcfsrstphpkrc*rih*rs*rnkkarw*grhww**t
ryqwwklc*tnrrch*t*csnrkd*tlcsnslhneiqks*rcfcle**sptrslifplhk
qskeylqmawtyri*lwys*rkcsykrc*nwwclwr*krdrrw*riwlrqletvlps*y*
ynqlw*yyaiitryqf*lklpkkknqm*lt*hk*knivdics*l


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA115 (SLA115Q) /CSM/SL/SLA1-A/SLA115Q.Seq.d/ 1249 0.0
SLC178 (SLC178Q) /CSM/SL/SLC1-D/SLC178Q.Seq.d/ 1231 0.0
SLG622 (SLG622Q) /CSM/SL/SLG6-A/SLG622Q.Seq.d/ 1229 0.0
SLE339 (SLE339Q) /CSM/SL/SLE3-B/SLE339Q.Seq.d/ 1223 0.0
SLB294 (SLB294Q) /CSM/SL/SLB2-D/SLB294Q.Seq.d/ 1215 0.0
SLB703 (SLB703Q) /CSM/SL/SLB7-A/SLB703Q.Seq.d/ 1195 0.0
SLB181 (SLB181Q) /CSM/SL/SLB1-D/SLB181Q.Seq.d/ 1164 0.0
CHB257 (CHB257Q) /CSM/CH/CHB2-C/CHB257Q.Seq.d/ 1158 0.0
CFJ672 (CFJ672Q) /CSM/CF/CFJ6-C/CFJ672Q.Seq.d/ 1158 0.0
CFI506 (CFI506Q) /CSM/CF/CFI5-A/CFI506Q.Seq.d/ 1152 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 1102 0.0 3
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence. 42 1e-10 4
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence. 42 2e-10 4
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence. 42 2e-10 4
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence. 42 2e-10 4
BU106121|BU106121.1 603006693F1 CSEQCHL01 Gallus gallus cDNA clone ChEST25i24 5', mRNA sequence. 42 2e-10 4
BU491071|BU491071.1 604128885F1 CSEQRBN37 Gallus gallus cDNA clone ChEST952i22 5', mRNA sequence. 42 3e-10 4
BU491812|BU491812.1 604130286F1 CSEQRBN37 Gallus gallus cDNA clone ChEST955l21 5', mRNA sequence. 42 3e-10 4
BU489174|BU489174.1 604129142F1 CSEQRBN37 Gallus gallus cDNA clone ChEST953c11 5', mRNA sequence. 42 3e-10 4
BU383046|BU383046.1 603856520F1 CSEQCHN75 Gallus gallus cDNA clone ChEST861g6 5', mRNA sequence. 42 3e-10 4
dna update 2004. 1. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 303 3e-83
AY250704_1(AY250704|pid:none) Glycine max aldehyde dehydrogenase... 207 2e-52
EF145268_1(EF145268|pid:none) Populus trichocarpa clone WS01122_... 195 1e-48
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 192 1e-47
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 190 4e-47
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 188 1e-46
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 187 2e-46
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 186 7e-46
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 184 2e-45
AK145873_1(AK145873|pid:none) Mus musculus 14 days embryo liver ... 183 3e-45
protein update 2009. 5.31
PSORT

psg: 0.61 gvh: 0.41 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLA115 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLA115Z
3' end seq.
>SLA115Z.Seq
NNNNNNNNNNCCCATTTTGGAACGTTTAACCAAAGCCTACAAAACCATTAAAAATCGGTA
ATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAAT
TCACTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATA
AACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATG
CTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATC
TTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCA
CAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAG
TTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAG
AGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTA
CTAATACAATCAACTATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAA
ATTACCAAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTGTTGA
TATTTGTTCATAATTA
Length of 3' end seq. 676
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -