SLA112
Library SL
(Link to library)
Clone ID SLA112
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1|Contig-U16510-1
Original site URL
Representative seq. ID SLA112P
(Link to Original site)
Representative DNA sequence
>SLA112 (SLA112Q) /CSM/SL/SLA1-A/SLA112Q.Seq.d/
ATTTGCGGTAACGTCCAATTATGGAAAGGTGCCTCCACCACTTCACTCATTACATTAGCC
GTTAGCAAAATCATTGAAAAGGTTTTAGTTGAAAATGATGTCGACCCAGCCGTCTGTTGT
GTCCTCATTGGTCCAGGTCGTACCGTTGGTGAACAAATGATTCAAGATAAACGTTTCGGT
TTAATTTCATTCACTGGTTCAACTGAAGTCGGTCGTCGTATCTCTAGTACCGTCCACGGT
TACTTTGGTAAGACCATCCTCGAATTAGGTGGTAACAATGCCATCGTTGTTGCTGAAGAT
GCTGATATTGAACTCGTTCTCCGTGCCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAA
CGTTGTACCACTTGTAGACGTTTATTCGTTCACGAATCATTGTATGACACCATTTTGGAA
CGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTA
GTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATA
AAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTXXXXXXXXXXTCTGGTTCTTCTGCTGC
TTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTC
TTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTTC
CCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTCTGC
TCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGCAAC
TACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGCAAC
CACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGCTGCAACCATAGCTACAAC
CACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAAC
CACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAATA
ATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATAATT
TTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAA
sequence update 1997. 5. 7
Translated Amino Acid sequence
ICGNVQLWKGASTTSLITLAVSKIIEKVLVENDVDPAVCCVLIGPGRTVGEQMIQDKRFG
LISFTGSTEVGRRISSTVHGYFGKTILELGGNNAIVVAEDADIELVLRAVLFASVGTTGQ
RCTTCRRLFVHESLYDTILERLTKAYKTIKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEI
KKQGGKVVIGG---

---WFFCCFIFTIIICCKLFSIFICCKLFSIFICCKLFPIFICIIKLFPIFICIIKLCPI
FICIIKLCSIFICIIFICIIFICIICSNYSCNYNCNYSCNYNCNYNRNHSYNHSHNHSYN
HSCNHSYNHSCNYNCNYNRNHSYNHSYNHSYLLNLIKKHFLSSITTIIILIIIVSKNDIK
NPLFFSIIFKLNIK*ikkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ICGNVQLWKGASTTSLITLAVSKIIEKVLVENDVDPAVCCVLIGPGRTVGEQMIQDKRFG
LISFTGSTEVGRRISSTVHGYFGKTILELGGNNAIVVAEDADIELVLRAVLFASVGTTGQ
RCTTCRRLFVHESLYDTILERLTKAYKTIKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEI
KKQGGKVVIGG---

---sgssaassspsssaassspsssaassspsssaassspsssassssspsssassssap
sssassssapsssassssassssassaattaattiattaatttatttattatttatttat
ttaatiatttaatttatttattatttatttats*i*sknifyqvslq**f****yqkmil
kipffsl*fln*i*nk*kkkk

Frame B:
favtsnygkvppplhslh*plakslkrf*lkmmstqpsvvsslvqvvplvnk*fkinvsv
*fhslvqlksvvvslvpstvtlvrpssn*vvtmpslllkmlilnsfsvpfsllllvpldn
vvplvdvysftnhcmtpfwnv*pkptkplksvihlkkvf**vhstpkallknslkvlkk*
kskvvrsslv---

---lvllllhlhhhhllqallhlhllqallhlhllqalphlhlhhqalphlhlhhqalph
lhlhhqallhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlqlqlqlqpqpqlqpqpqpqlq
pqlqp*lqpqlqlqlqlqpqpqlqpqlqpqlplkfnqktffikyhynnnfnnnsikk*y*
kspfflynf*ikykinkkkkk

Frame C:
lr*rpimerclhhfthyisr*qnh*kgfs*k*crpsrllcphwsrsyrw*tndsr*tfrf
nfihwfn*srssyl*yrprllw*dhprirw*qchrcc*rc*y*trspcrslcfcwyhwtt
lyhl*tfirsriiv*hhfgtfnqslqnh*nr*st*rrcfsrstphpkrc*rih*rs*rnk
karw*grhww---

---WFFCCFIFTIIICCKLFSIFICCKLFSIFICCKLFPIFICIIKLFPIFICIIKLCPI
FICIIKLCSIFICIIFICIIFICIICSNYSCNYNCNYSCNYNCNYNRNHSYNHSHNHSYN
HSCNHSYNHSCNYNCNYNRNHSYNHSYNHSYLLNLIKKHFLSSITTIIILIIIVSKNDIK
NPLFFSIIFKLNIK*ikkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA112 (SLA112Q) /CSM/SL/SLA1-A/SLA112Q.Seq.d/ 1491 0.0
VFO822 (VFO822Q) /CSM/VF/VFO8-A/VFO822Q.Seq.d/ 841 0.0
VFJ323 (VFJ323Q) /CSM/VF/VFJ3-A/VFJ323Q.Seq.d/ 749 0.0
SLD625 (SLD625Q) /CSM/SL/SLD6-B/SLD625Q.Seq.d/ 718 0.0
SFE588 (SFE588Q) /CSM/SF/SFE5-D/SFE588Q.Seq.d/ 676 0.0
VFH586 (VFH586Q) /CSM/VF/VFH5-D/VFH586Q.Seq.d/ 672 0.0
CFK478 (CFK478Q) /CSM/CF/CFK4-D/CFK478Q.Seq.d/ 646 0.0
CFG770 (CFG770Q) /CSM/CF/CFG7-C/CFG770Q.Seq.d/ 640 0.0
CHB718 (CHB718Q) /CSM/CH/CHB7-A/CHB718Q.Seq.d/ 638 0.0
CFB119 (CFB119Q) /CSM/CF/CFB1-A/CFB119Q.Seq.d/ 638 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 1136 0.0 8
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 438 0.0 7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 454 0.0 9
BX511100|BX511100.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-57M13. 84 3e-14 2
BX000361|BX000361.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-181F18. 82 5e-14 3
AL929014|AL929014.13 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-198B3. 82 2e-11 9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 54 2e-11 9
AC094276|AC094276.6 Rattus norvegicus clone CH230-3G18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 64 3e-11 3
AC093947|AC093947.6 Rattus norvegicus clone CH230-191J18, WORKING DRAFT SEQUENCE, 1 ordered piece. 54 4e-11 5
AL928941|AL928941.12 Zebrafish DNA sequence from clone CH211-236L14 in linkage group 25. 62 2e-10 7
dna update 2004. 1. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 322 2e-86
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 179 2e-43
(Q41247) RecName: Full=Aldehyde dehydrogenase family 7 member A1... 173 1e-41
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ... 172 2e-41
BC081104_1(BC081104|pid:none) Xenopus laevis MGC83352 protein, m... 172 2e-41
AK145873_1(AK145873|pid:none) Mus musculus 14 days embryo liver ... 172 2e-41
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 172 2e-41
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 172 2e-41
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 169 2e-40
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 167 8e-40
protein update 2009. 5.31
PSORT

psg: 0.92 gvh: 0.56 alm: 0.02 top: 0.73 tms: 0.33 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

36.0 %: plasma membrane
36.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SLA112 is pla

5' end seq. ID SLA112F
5' end seq.
>SLA112F.Seq
ATTTGCGGTAACGTCCAATTATGGAAAGGTGCCTCCACCACTTCACTCATTACATTAGCC
GTTAGCAAAATCATTGAAAAGGTTTTAGTTGAAAATGATGTCGACCCAGCCGTCTGTTGT
GTCCTCATTGGTCCAGGTCGTACCGTTGGTGAACAAATGATTCAAGATAAACGTTTCGGT
TTAATTTCATTCACTGGTTCAACTGAAGTCGGTCGTCGTATCTCTAGTACCGTCCACGGT
TACTTTGGTAAGACCATCCTCGAATTAGGTGGTAACAATGCCATCGTTGTTGCTGAAGAT
GCTGATATTGAACTCGTTCTCCGTGCCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAA
CGTTGTACCACTTGTAGACGTTTATTCGTTCACGAATCATTGTATGACACCATTTTGGAA
CGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTA
GTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATA
AAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID SLA112Z
3' end seq.
>SLA112Z.Seq
NNNNNNNNNNTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTC
TTCTCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCC
ATCTTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCC
ATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATC
ATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGC
AACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTAC
AACCACAGCTGCAACCATAGCTACAACCACAGCTGCAACTACAACTGCAACTACAACCGC
AACCACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACAT
TTTTTATCAAGTATCACTACAATAATAATTTTAATAATAATAGTATCAAAAAATGATATT
AAAAATCCCCTTTTTTTCTCTATAATTTTTAAATTAAATATAAAATAAATAAAAAAAAAA
AAAAAA
Length of 3' end seq. 606
Connected seq. ID SLA112P
Connected seq.
>SLA112P.Seq
ATTTGCGGTAACGTCCAATTATGGAAAGGTGCCTCCACCACTTCACTCATTACATTAGCC
GTTAGCAAAATCATTGAAAAGGTTTTAGTTGAAAATGATGTCGACCCAGCCGTCTGTTGT
GTCCTCATTGGTCCAGGTCGTACCGTTGGTGAACAAATGATTCAAGATAAACGTTTCGGT
TTAATTTCATTCACTGGTTCAACTGAAGTCGGTCGTCGTATCTCTAGTACCGTCCACGGT
TACTTTGGTAAGACCATCCTCGAATTAGGTGGTAACAATGCCATCGTTGTTGCTGAAGAT
GCTGATATTGAACTCGTTCTCCGTGCCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAA
CGTTGTACCACTTGTAGACGTTTATTCGTTCACGAATCATTGTATGACACCATTTTGGAA
CGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTA
GTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATA
AAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGT----------TCTGGTTCTTCTGCTGC
TTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTC
TTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTTC
CCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTCTGC
TCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGCAAC
TACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGCAAC
CACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGCTGCAACCATAGCTACAAC
CACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAAC
CACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAATA
ATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATAATT
TTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAA
Length of connected seq. 1169
Full length Seq ID -
Full length Seq. -
Length of full length seq. -