SLA104
Library SL
(Link to library)
Clone ID SLA104
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15331-1
Original site URL
Representative seq. ID SLA104P
(Link to Original site)
Representative DNA sequence
>SLA104 (SLA104Q) /CSM/SL/SLA1-A/SLA104Q.Seq.d/
AATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGTGAATCCGTCACCGA
AGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTTAGCT
CAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTATGATT
TTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGCTGTT
AAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGTTTTA
GTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGTTAAC
CCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGAAACC
CCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAACTGAA
TTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCACTGTT
GAATACAAAAAAGAAGGTCACAAAATCACTCCAGTCAGAGTACACACCATCGTTATTTCA
ACTCAACACGACGAAAAGTCACCAACGAACXXXXXXXXXXAATGGGTGATTTCTGGTTTA
ACCGGTCGTAAGATCATCATTGATTCATATGGTGGTTGGGGTGCTCACGGTGGTGGTGCT
TTCTCTGGTAAAGATGCCACTAAAGTCGATCGTTCTGGTGCTTACGCTGCTAGATGGATC
GCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATCGTTGTTTAGTTCAAGTTTCATACTCT
ATTGGTGTTGCCAAGCCACTCAGTGTCTTTGTTGATACCTATGGTACCGGTAAAAAGACT
GATGCTGAAATCCTTGCCATCATCGATAATAACTTTGATTTACGTCCAGGTTGTTTAATG
CGTGACCTCCAATTAACTCGTCCAATTTTCCAAAAAACTGCCTCTGGTGGTCACTTTGGT
AGAAATGATCCAGACTTTACCTGGGAAACCGTCAAAGAACTCAAGATGTAAGGATAGATC
AATGAATAAATAAGATAGATAAATAAGTGAAAAAAAAAAAATATAATAATCAAAAAAAAA
AAAAAAAAAA
sequence update 1999.11.18
Translated Amino Acid sequence
nishni*nvilfih**IRHRSHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMI
LGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKVN
PEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVTV
EYKKEGHKITPVRVHTIVISTQHDEKSPTN---

---WVISGLTGRKIIIDSYGGWGAHGGGAFSGKDATKVDRSGAYAARWIAKSLVAAGLAD
RCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTRPIFQ
KTASGGHFGRNDPDFTWETVKELKM*g*ine*ir*ink*kkkniiikkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nishni*nvilfih**IRHRSHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMI
LGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKVN
PEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVTV
EYKKEGHKITPVRVHTIVISTQHDEKSPTN---

---ng*flv*pvvrsslihmvvgvltvvvlslvkmplksivlvltlldgslnl*lplvlp
ivv*fkfhtllvlpshsvsllipmvpvkrlmlkslpssiitliyvqvv*cvtsn*lvqfs
kklplvvtlvemiqtlpgkpsknsrckdrsmnk*dr*isekkki**skkkkkk

Frame B:
ifhtiykmssylftsesvteviqiksvikyqmlfsmlv*lkihyqkllvklqpklvwl*f
*vklppkptltikklfvkllkrlvmmthqkvlitklamf*lqlnnnhqillkvstlvklt
qkilvlvikvtclvmpptkpql*chllisspln*stn*lnyvtmvp*pglvqmprlksll
ntkkkvtkslqseytpslfqlnttkshqr---

---mgdfwfnrs*dhh*fiwwlgcsrwwcflw*rch*srsfwclrc*mdr*ifscrwscr
slfsssfilywccqatqclc*ylwyr*kd*c*npchhr**l*ftsrlfna*ppinssnfp
knclwwslw*k*srlylgnrqrtqdvridq*inkidk*vkkkkynnqkkkkk

Frame C:
yftqyikchliyslvnpspkssr*nl*ssirccsrclfssrsiikscl*ncnqnwygydf
r*nyhqsqr*lskscs*sc*kdwl**likrf*lqnlqcfscn*ttitrycsrcphw*s*p
rrywcw*srshvwlchqrnpnfnatysfprl*isqqin*itsqwylslgssrcqdsshc*
iqkrrsqnhssqsthhryfnstrrkvtne---

---WVISGLTGRKIIIDSYGGWGAHGGGAFSGKDATKVDRSGAYAARWIAKSLVAAGLAD
RCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTRPIFQ
KTASGGHFGRNDPDFTWETVKELKM*g*ine*ir*ink*kkkniiikkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA104 (SLA104Q) /CSM/SL/SLA1-A/SLA104Q.Seq.d/ 2139 0.0
VFN128 (VFN128Q) /CSM/VF/VFN1-B/VFN128Q.Seq.d/ 1221 0.0
VFM766 (VFM766Q) /CSM/VF/VFM7-C/VFM766Q.Seq.d/ 1221 0.0
VFL503 (VFL503Q) /CSM/VF/VFL5-A/VFL503Q.Seq.d/ 1221 0.0
VFL319 (VFL319Q) /CSM/VF/VFL3-A/VFL319Q.Seq.d/ 1221 0.0
VFL166 (VFL166Q) /CSM/VF/VFL1-C/VFL166Q.Seq.d/ 1221 0.0
VFI164 (VFI164Q) /CSM/VF/VFI1-C/VFI164Q.Seq.d/ 1221 0.0
VFI116 (VFI116Q) /CSM/VF/VFI1-A/VFI116Q.Seq.d/ 1221 0.0
VFF889 (VFF889Q) /CSM/VF/VFF8-D/VFF889Q.Seq.d/ 1221 0.0
VFF635 (VFF635Q) /CSM/VF/VFF6-B/VFF635Q.Seq.d/ 1221 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ390497|AJ390497.1 Candida albicans partial mRNA for S-adenosylmethionine synthetase 2 (sam2 gene). 107 2e-58 4
AX830438|AX830438.1 Sequence 1158 from Patent WO03072602. 100 3e-51 6
AX819408|AX819408.1 Sequence 1158 from Patent EP1338608. 100 3e-51 6
AX595308|AX595308.1 Sequence 962 from Patent EP1258494. 100 3e-51 6
M23368|M23368.1 Saccharomyces cerevisiae S-adenosylmethionine synthetase (SAM2) gene, complete cds. 100 3e-50 6
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073. 100 1e-42 7
Z71271|Z71271.1 C.roseus mRNA for S-adenosyl-L-methionine synthetase 1. 82 5e-33 4
CD858942|CD858942.1 CI.003K13F020204 CI Pisum sativum cDNA clone CI003K13, mRNA sequence. 82 6e-33 4
AL424144|AL424144.1 T7 end of clone AZ0AA012F03 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 78 7e-33 5
AJ001705|AJ001705.1 Schizosaccharomyces pombe sam1 gene. 86 1e-32 6
dna update 2004. 2. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54F07) RecName: Full=S-adenosylmethionine synthetase; ... 604 e-173
AY324626_1(AY324626|pid:none) Amoeba proteus S-adenosylmethionin... 430 e-119
AB461924_1(AB461924|pid:none) Cylindrotheca closterium MAT mRNA ... 423 e-117
AB461925_1(AB461925|pid:none) Ditylum brightwellii MAT mRNA for ... 417 e-115
AB461922_1(AB461922|pid:none) Asterionella glacialis MAT mRNA fo... 417 e-115
FJ404748_1(FJ404748|pid:none) Porphyra yezoensis putative S-aden... 412 e-113
(A9NUH8) RecName: Full=S-adenosylmethionine synthetase 1; ... 408 e-112
(Q9FPL6) RecName: Full=S-adenosylmethionine synthetase 2; ... 407 e-112
AM177282_1(AM177282|pid:none) Oryza rufipogon partial sams gene ... 407 e-112
AM177232_1(AM177232|pid:none) Oryza sativa partial sams gene for... 407 e-112
protein update 2009. 5.31
PSORT

psg: 0.62 gvh: 0.43 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for SLA104 is nuc

5' end seq. ID SLA104F
5' end seq.
>SLA104F.Seq
AATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGTGAATCCGTCACCGA
AGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTTAGCT
CAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTATGATT
TTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGCTGTT
AAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGTTTTA
GTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGTTAAC
CCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGAAACC
CCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAACTGAA
TTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCACTGTT
GAATACAAAAAAGAAGGTCACAAAATCACTCCAGTCAGAGTACACACCATCGTTATTTCA
ACTCAACACGACGAAAAGTCACCAACGAACNNNNNNNNNN
Length of 5' end seq. 640
3' end seq. ID SLA104Z
3' end seq.
>SLA104Z.Seq
NNNNNNNNNNAATGGGTGATTTCTGGTTTAACCGGTCGTAAGATCATCATTGATTCATAT
GGTGGTTGGGGTGCTCACGGTGGTGGTGCTTTCTCTGGTAAAGATGCCACTAAAGTCGAT
CGTTCTGGTGCTTACGCTGCTAGATGGATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCC
GATCGTTGTTTAGTTCAAGTTTCATACTCTATTGGTGTTGCCAAGCCACTCAGTGTCTTT
GTTGATACCTATGGTACCGGTAAAAAGACTGATGCTGAAATCCTTGCCATCATCGATAAT
AACTTTGATTTACGTCCAGGTTGTTTAATGCGTGACCTCCAATTAACTCGTCCAATTTTC
CAAAAAACTGCCTCTGGTGGTCACTTTGGTAGAAATGATCCAGACTTTACCTGGGAAACC
GTCAAAGAACTCAAGATGTAAGGATAGATCAATGAATAAATAAGATAGATAAATAAGTGA
AAAAAAAAAAATATAATAATCAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 520
Connected seq. ID SLA104P
Connected seq.
>SLA104P.Seq
AATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGTGAATCCGTCACCGA
AGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTTAGCT
CAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTATGATT
TTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGCTGTT
AAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGTTTTA
GTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGTTAAC
CCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGAAACC
CCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAACTGAA
TTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCACTGTT
GAATACAAAAAAGAAGGTCACAAAATCACTCCAGTCAGAGTACACACCATCGTTATTTCA
ACTCAACACGACGAAAAGTCACCAACGAAC----------AATGGGTGATTTCTGGTTTA
ACCGGTCGTAAGATCATCATTGATTCATATGGTGGTTGGGGTGCTCACGGTGGTGGTGCT
TTCTCTGGTAAAGATGCCACTAAAGTCGATCGTTCTGGTGCTTACGCTGCTAGATGGATC
GCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATCGTTGTTTAGTTCAAGTTTCATACTCT
ATTGGTGTTGCCAAGCCACTCAGTGTCTTTGTTGATACCTATGGTACCGGTAAAAAGACT
GATGCTGAAATCCTTGCCATCATCGATAATAACTTTGATTTACGTCCAGGTTGTTTAATG
CGTGACCTCCAATTAACTCGTCCAATTTTCCAAAAAACTGCCTCTGGTGGTCACTTTGGT
AGAAATGATCCAGACTTTACCTGGGAAACCGTCAAAGAACTCAAGATGTAAGGATAGATC
AATGAATAAATAAGATAGATAAATAAGTGAAAAAAAAAAAATATAATAATCAAAAAAAAA
AAAAAAAAAA
Length of connected seq. 1140
Full length Seq ID -
Full length Seq. -
Length of full length seq. -