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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ826
Library AF
(Link to library)
Clone ID AFJ826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFJ826P
(Link to Original site)
Representative DNA sequence 
>AFJ826 (AFJ826Q) /CSM/AF/AFJ8-B/AFJ826Q.Seq.d/
AAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATGG
CAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTT
TTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTA
CTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTG
AATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTA
ATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAA
TTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTT
TCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCC
TTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTAT
GATACTGCTTATCXXXXXXXXXXGCTCAACAAGGTTATCAAGCATGGAAANAAGGTGTCA
ATNANATTGGTGATGANATCGCCAATACTGCNCATNATGTAGGTGTTGGTTTNGCCAATA
CTGCNCGTNAAGTAGGTNATGGAATTANAATCCCTGCANAGGAGGGATATNAACTCATTA
AANATGGAGCTNAANAAACTTGGGTTAANAAATATTNAAGGTTATCCTTNATTAAAATTN
AAAAAGCCCNACAAANAATGG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAY---

---AQQGYQAWKXGVNXIGDXIANTAHXVGVGXANTARXVGXGIXIPAXEGYXLIKXGAX
XTWVXKYXRLSXIKIXKAXQXM
Translated Amino Acid sequence (All Frames) 
Frame A:
kliiffifiiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAY---

---AQQGYQAWKXGVNXIGDXIANTAHXVGVGXANTARXVGXGIXIPAXEGYXLIKXGAX
XTWVXKYXRLSXIKIXKAXQXM

Frame B:
n*lfflsslyti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashy
s*flgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*n
c*sq*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihsm
illi---

---lnkvikhgxkvsxxlvmxspilxxm*vlvxpilxvk*vmelxslxrrdxnslxmelx
klglxnixgypxlkxkkpxkxw

Frame C:
inyffylhyiqfnfinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhptt
hnfwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdri
adhsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv*
ycl---

---strlssmexrcqxxw**xrqycxxcrcwfxqycxxsrxwnxnpcxggixth*xwsxx
nlg*xixkvilx*nxksptxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/                       1061   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1061   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1061   0.0
SFJ191 (SFJ191Q) /CSM/SF/SFJ1-D/SFJ191Q.Seq.d/                       1061   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1061   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1061   0.0
SFF510 (SFF510Q) /CSM/SF/SFF5-A/SFF510Q.Seq.d/                       1061   0.0
SFE450 (SFE450Q) /CSM/SF/SFE4-C/SFE450Q.Seq.d/                       1061   0.0
SFD458 (SFD458Q) /CSM/SF/SFD4-C/SFD458Q.Seq.d/                       1061   0.0
CHC556 (CHC556Q) /CSM/CH/CHC5-C/CHC556Q.Seq.d/                       1061   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AW076871|AW076871.1 fj03a01.y1 Zebrafish adult olfactory Danio rerio cDNA 5', mRNA sequence.    50  0.044  1
BH689643|BH689643.1 BOMDR69TF BO_2_3_KB Brassica oleracea genomic clone BOMDR69, DNA sequence.    50  0.044  1
BH530565|BH530565.1 BOGJR47TF BOGJ Brassica oleracea genomic clone BOGJR47, DNA sequence.    50  0.044  1
AC021820|AC021820.7 Homo sapiens chromosome , clone RP11-40H19, complete sequence.    46  0.15  2
AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    40  0.53  4
AC009640|AC009640.3 Homo sapiens clone RP11-71B15, WORKING DRAFT SEQUENCE, 17 unordered pieces.    46  0.68  1
AC080100|AC080100.7 Homo sapiens chromosome 11, clone RP11-454H19, complete sequence.    46  0.68  1
BX640523|BX640523.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-271E10.    44  1.3  3
AX344740|AX344740.1 Sequence 165 from Patent WO0200927.           38  1.5  2
AC068700|AC068700.5 Homo sapiens chromosome 8, clone RP11-594N15, complete sequence.    40  2.1  3
dna update 2003. 9. 6
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 1,116,756,865
protein update 2009. 4.24
PSORT 

 psg: 0.73  gvh: 0.40  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFJ826 is cyt
5' end seq. ID AFJ826F
5' end seq. 
>AFJ826F.Seq
AAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATGG
CAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTT
TTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTA
CTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTG
AATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTA
ATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAA
TTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTT
TCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCC
TTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTAT
GATACTGCTTATC----------
Length of 5' end seq. 553
3' end seq. ID AFJ826Z
3' end seq. 
>AFJ826Z.Seq
----------GCTCAACAAGGTTATCAAGCATGGAAANAAGGTGTCAATNANATTGGTGA
TGANATCGCCAATACTGCNCATNATGTAGGTGTTGGTTTNGCCAATACTGCNCGTNAAGT
AGGTNATGGAATTANAATCCCTGCANAGGAGGGATATNAACTCATTAAANATGGAGCTNA
ANAAACTTGGGTTAANAAATATTNAAGGTTATCCTTNATTAAAATTNAAAAAGCCCNACA
AANAATGG
Length of 3' end seq. 238
Connected seq. ID AFJ826P
Connected seq. 
>AFJ826P.Seq
AAATTAATTATTTTTTTTATCTTCATTATATACAATTTAATTTCATTAATTTTTTAATGG
CAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTT
TTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTA
CTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTG
AATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTA
ATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAA
TTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTT
TCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCC
TTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTAT
GATACTGCTTATC----------GCTCAACAAGGTTATCAAGCATGGAAANAAGGTGTCA
ATNANATTGGTGATGANATCGCCAATACTGCNCATNATGTAGGTGTTGGTTTNGCCAATA
CTGCNCGTNAAGTAGGTNATGGAATTANAATCCCTGCANAGGAGGGATATNAACTCATTA
AANATGGAGCTNAANAAACTTGGGTTAANAAATATTNAAGGTTATCCTTNATTAAAATTN
AAAAAGCCCNACAAANAATGG
Length of connected seq. 791
Full length Seq ID -
Full length Seq. -
Length of full length seq. -