SHL889
Library SH
(Link to library)
Clone ID SHL889
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHL889 (SHL889Q) /CSM/SH/SHL8-D/SHL889Q.Seq.d/
XXXXXXXXXXTATCTCTCAACATATTTCAACCGCTGGTACTGAAGCATCTGGTACAAGTA
ATATGAAATTCAGTATGAATGGTGGTCTTATCATTGGTACTTTGGATGGTGCAAACATTG
AAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTGGTGCTCGTTCTGAAGAGG
TCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCTC
GTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCAAGATATTA
TCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGGTTCTTACT
TGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAAT
CAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATG
CTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATG
AAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTA
TCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTAT
CTGTTATCTCT
sequence update 2002. 9.10
Translated Amino Acid sequence
---ISQHISTAGTEASGTSNMKFSMNGGLIIGTLDGANIEIRDAIGHENMYIFGARSEEV
NKVKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQDIINSVSGGNDHYILSYDFGSYL
DIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNE
EARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVIS


Translated Amino Acid sequence (All Frames)
Frame A:
---ISQHISTAGTEASGTSNMKFSMNGGLIIGTLDGANIEIRDAIGHENMYIFGARSEEV
NKVKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQDIINSVSGGNDHYILSYDFGSYL
DIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNE
EARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVIS


Frame B:
---slnifqplvlkhlvqvi*nsv*mvvlslvlwmvqtlkfvmplvmkictslvlvlkrs
tk*rklfmmenshqtldglvf*pllkkillvhmnnskilstllvvamiitflvmilvltw
ifkiqlikiskielnglknqlwlqfvvvnsvqieplksmlnkfgvlkngrdqvqfqfqmk
klvly*fhhhlvhqmismlsqlkdyhl*lllnkllllhylls


Frame C:
---lstyfnrwy*siwyk*yeiqyewwsyhwyfgwckh*ns*chws*kyvhlwcsf*rgq
qskenys*wkihtrh*mgscfnry*rryfwst*tipryyqlc*wwq*slhs*l*fwfllg
yskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk*r
ssffissttiwftk*yqcyln*kiitfnfc*tnfcfsiicyl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL889 (SHL889Q) /CSM/SH/SHL8-D/SHL889Q.Seq.d/ 1310 0.0
SHJ645 (SHJ645Q) /CSM/SH/SHJ6-B/SHJ645Q.Seq.d/ 1310 0.0
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/ 1310 0.0
SHA643 (SHA643Q) /CSM/SH/SHA6-B/SHA643Q.Seq.d/ 1310 0.0
SHA308 (SHA308Q) /CSM/SH/SHA3-A/SHA308Q.Seq.d/ 1310 0.0
SHA145 (SHA145Q) /CSM/SH/SHA1-B/SHA145Q.Seq.d/ 1310 0.0
SFF394 (SFF394Q) /CSM/SF/SFF3-D/SFF394Q.Seq.d/ 1310 0.0
CHE633 (CHE633Q) /CSM/CH/CHE6-B/CHE633Q.Seq.d/ 1310 0.0
AHO468 (AHO468Q) /CSM/AH/AHO4-C/AHO468Q.Seq.d/ 1310 0.0
AHO462 (AHO462Q) /CSM/AH/AHO4-C/AHO462Q.Seq.d/ 1310 0.0

own update 2002.12.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 1310 0.0 1
X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1. 127 3e-27 3
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4. 82 1e-20 2
DY887127|DY887127.1 CeleSEQ3027 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ3027, mRNA sequence. 60 1e-14 2
DY891546|DY891546.1 CeleSEQ10267 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ10267, mRNA sequence. 60 1e-14 2
DY894970|DY894970.1 CeleSEQ14670 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ14670, mRNA sequence. 60 1e-14 2
EH431847|EH431847.1 NPE00000861 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence. 50 1e-10 2
AY635994|AY635994.1 Monacrosporium haptotylum glycogen phosphorylase-like protein (Gph1) mRNA, complete cds. 68 3e-07 1
DY890707|DY890707.1 CeleSEQ9917 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ9917, mRNA sequence. 56 1e-06 2
EH431298|EH431298.1 NPE00000022 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence. 42 1e-06 2
dna update 2007. 3.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho... 180 3e-44
AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos... 179 6e-44
(Q9SD76) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 174 2e-42
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c... 173 5e-42
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos... 173 5e-42
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou... 173 5e-42
(P32811) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 172 8e-42
CP001330_331(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 172 8e-42
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 172 1e-41
DQ279079_1(DQ279079|pid:none) Chlamydomonas reinhardtii PhoA (PH... 172 1e-41
protein update 2009. 5.31
PSORT

psg: 0.75 gvh: 0.38 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for SHL889 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHL889Z
3' end seq.
>SHL889Z.Seq
NNNNNNNNNNTATCTCTCAACATATTTCAACCGCTGGTACTGAAGCATCTGGTACAAGTA
ATATGAAATTCAGTATGAATGGTGGTCTTATCATTGGTACTTTGGATGGTGCAAACATTG
AAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTGGTGCTCGTTCTGAAGAGG
TCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCTC
GTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCAAGATATTA
TCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGGTTCTTACT
TGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAAT
CAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATG
CTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATG
AAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTA
TCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTAT
CTGTTATCTCT
Length of 3' end seq. 671
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -