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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL846
Library SH
(Link to library)
Clone ID SHL846
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10784-1|Contig-U12682-1
Original site URL
Representative seq. ID SHL846P
(Link to Original site)
Representative DNA sequence 
>SHL846 (SHL846Q) /CSM/SH/SHL8-B/SHL846Q.Seq.d/
ATTTTTTTTTTGAACACATGAAATGATTCATAAAATGTATTTTTTTTTAATACTTTTATT
TTCATTATTTATTATAGTTTATTCGGCACCAAATCGGGTAACCAGAAATGAAACTTCTAT
AGTATATACCTATTCCCTTGATAGNGATTATTATACTCGTTTTGTTATGTATCTAAATGC
TACTACCTTAAAAACTGATATAGCTCCAAATTATTTTGATTGCAGCCAAATTGTCAACTC
AAANANATATTGNGTATTCCATTTTGCTGATTCATTTTCAANATTATGGGGAGCCGTTTA
CAGTAAAGTCTGTACAANAACAGTATCTGACCCAACGGAGGATTGTCAAAGTACTTGGAT
CACTGATAATGCTTTTCCANAACCCCTCAATGTAAAATTTAGNGGATATCCAAGTACGTC
TGGAGGTGATGTTGTTTTTACTGGCCTTTTTTTAAXXXXXXXXXXCTTTGTTTCAACATT
AATTGGAGATGATTTGGGTCCAAATACAACATTAACATATTTTGAACCAAGAATCACAGT
TATTCCAACAGTTAAAAATAAAAAAGATGGTATTTCAATAAGAGTGGGTGGTGTTAGTTT
ATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAGAAAATGTTTCTCTTTCATGTGA
TTTACAATGTAGTTTATCTCCAAATGAAACATTTTATTTAAGTAATCCAATACTAAGTTC
AAATGAAAAAGATATAACAAATAGTACTGATTGTTTATCATGTCATTCAATGAATTCAAT
TGTTGTTGATGAAACATCAGGAGTATTATATCTCCAATTAGGCCCAACATCATATCATTA
TGATGTTAAAATCGAAGAAATTCAATCATCATTAAATCCATCATCATCAAATGGTGGTGA
AAGAAAATCATCAAAACTATCAGGTGGTGCAATTGCTGGTATTACAATTGGTTGTGTTGC
TGGTGCTGGTGCTTTAGTTGGTTCTGTCTTTTATTTTAAATTAATCACTCGTGTTAAAAA
AGCATTCAATTAATATTTTAATAATAGTATTTGATGGTGTAAATTACAAATTGGGATCCA
AATTACAGTAGATCATACACAAATTCAAGTGAATAACTTTAATTACACTGGAAAATATTA
ATTAATGTATTATAAAAAATATTCATAACATTTNAACNGTATCTTATNATTATAANATCA
TTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
fff*THEMIHKMYFFLILLFSLFIIVYSAPNRVTRNETSIVYTYSLDXDYYTRFVMYLNA
TTLKTDIAPNYFDCSQIVNSXXYXVFHFADSFSXLWGAVYSKVCTXTVSDPTEDCQSTWI
TDNAFPXPLNVKFXGYPSTSGGDVVFTGLFL---

---FVSTLIGDDLGPNTTLTYFEPRITVIPTVKNKKDGISIRVGGVSLSGIINASLGISS
ENVSLSCDLQCSLSPNETFYLSNPILSSNEKDITNSTDCLSCHSMNSIVVDETSGVLYLQ
LGPTSYHYDVKIEEIQSSLNPSSSNGGERKSSKLSGGAIAGITIGCVAGAGALVGSVFYF
KLITRVKKAFN*yfnnsi*wcklqigiqitvdhtqiqvnnfnytgky*lmyykkys*hxn
xilxl*xhf
Translated Amino Acid sequence (All Frames) 
Frame A:
ifflnt*nds*nvfffntfifiiyyslfgtksgnqk*nfysiylfp**xllysfcyvskc
yylkn*yssklf*lqpncqlkxilxipfc*fifximgsrlq*slyxnsi*pngglskyld
h**cfsxtpqcki*xiskyvwr*ccfywpff---

---lcfninwr*fgskyninif*tknhsysns*k*krwyfnksgwc*firyykckfrnfi
rkcfsfm*ftm*fisk*nilfk*sntkfk*krynk*y*lfimsfnefncc**nirsiisp
irpniisl*c*nrrnsiiiksiiikww*kkiiktirwcncwyynwlccwcwcfswfcllf
*inhsc*ksiqlif***ylmv*itnwdpnysrsytnsse*l*lhwkilinvl*kifitfx
xylxiixsf

Frame B:
fff*THEMIHKMYFFLILLFSLFIIVYSAPNRVTRNETSIVYTYSLDXDYYTRFVMYLNA
TTLKTDIAPNYFDCSQIVNSXXYXVFHFADSFSXLWGAVYSKVCTXTVSDPTEDCQSTWI
TDNAFPXPLNVKFXGYPSTSGGDVVFTGLFL---

---FVSTLIGDDLGPNTTLTYFEPRITVIPTVKNKKDGISIRVGGVSLSGIINASLGISS
ENVSLSCDLQCSLSPNETFYLSNPILSSNEKDITNSTDCLSCHSMNSIVVDETSGVLYLQ
LGPTSYHYDVKIEEIQSSLNPSSSNGGERKSSKLSGGAIAGITIGCVAGAGALVGSVFYF
KLITRVKKAFN*yfnnsi*wcklqigiqitvdhtqiqvnnfnytgky*lmyykkys*hxn
xilxl*xhf

Frame C:
fffehmk*fikciff*yfyfhyll*firhqig*pemkll*yipiplixiiilvllci*ml
lp*kli*lqiiliaaklstqxxixysillihfqxygepftvksvqxqyltqrrivkvlgs
limlfxnpsm*nlxdiqvrlevmlfllaff*---

---lfqh*lemiwvqiqh*hilnqesqlfqqlkikkmvfq*ewvvlvyqvl*mqv*efhq
kmflfhviynvvylqmkhfi*viqy*vqmkki*qivlivyhviq*iqlllmkhqeyyisn
*aqhhiimmlkskkfnhh*ihhhqmvvkenhqnyqvvqllvlqlvvllvlvl*lvlsfil
n*slvlkkhsiniliivfdgvnyklgsklq*iihkfk*itlitlenin*ciiknihnixt
vsyxyxiil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL846 (SHL846Q) /CSM/SH/SHL8-B/SHL846Q.Seq.d/                       1372   0.0
SHL850 (SHL850Q) /CSM/SH/SHL8-C/SHL850Q.Seq.d/                       1350   0.0
SHG880 (SHG880Q) /CSM/SH/SHG8-D/SHG880Q.Seq.d/                       1338   0.0
SHJ839 (SHJ839Q) /CSM/SH/SHJ8-B/SHJ839Q.Seq.d/                       1324   0.0
CHF790 (CHF790Q) /CSM/CH/CHF7-D/CHF790Q.Seq.d/                       1320   0.0
SHA715 (SHA715Q) /CSM/SH/SHA7-A/SHA715Q.Seq.d/                       1308   0.0
SHJ515 (SHJ515Q) /CSM/SH/SHJ5-A/SHJ515Q.Seq.d/                       1300   0.0
SHL682 (SHL682Q) /CSM/SH/SHL6-D/SHL682Q.Seq.d/                       1296   0.0
SHJ782 (SHJ782Q) /CSM/SH/SHJ7-D/SHJ782Q.Seq.d/                       1294   0.0
SHC472 (SHC472Q) /CSM/SH/SHC4-C/SHC472Q.Seq.d/                       1292   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.   648   0.0    6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    88   1e-34  14
AF482962|AF482962.1 Dictyostelium discoideum ABC transporter AbcH.3 (abcH.3) gene, complete cds.    54   2e-24  6
U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.    80   5e-20  3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.    80   1e-19  3
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    54   2e-16  10
EC280833|EC280833.1 BRAINF089466C2 POSSUM_01-POSSUM-C-BRAIN-2KB Trichosurus vulpecula cDNA clone 1061024724865, mRNA sequence.    50   0.044  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   0.086  14
CL128446|CL128446.1 ISB1-94H17_Sp6.1 ISB1 Xenopus tropicalis genomic clone ISB1-94H17, genomic survey sequence.    38   0.11   2
AF465304|AF465304.1 Dictyostelium discoideum ABC transporter ABCA.2 (abca2) gene, complete cds.    48   0.33   2
dna update 2007. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS...   369   e-100
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS...   327   7e-88
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS...   307   4e-82
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS...   295   3e-78
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS...   287   4e-76
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS...   287   4e-76
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS...   287   4e-76
protein update 2009. 5.31
PSORT 

 psg: 0.99  gvh: 0.77  alm: 0.28  top: 0.47  tms: 0.07  mit: 0.38  mip: 0.06
 nuc: 0.03  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.29  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for SHL846 is exc
5' end seq. ID SHL846F
5' end seq. 
>SHL846F.Seq
ATTTTTTTTTTGAACACATGAAATGATTCATAAAATGTATTTTTTTTTAATACTTTTATT
TTCATTATTTATTATAGTTTATTCGGCACCAAATCGGGTAACCAGAAATGAAACTTCTAT
AGTATATACCTATTCCCTTGATAGNGATTATTATACTCGTTTTGTTATGTATCTAAATGC
TACTACCTTAAAAACTGATATAGCTCCAAATTATTTTGATTGCAGCCAAATTGTCAACTC
AAANANATATTGNGTATTCCATTTTGCTGATTCATTTTCAANATTATGGGGAGCCGTTTA
CAGTAAAGTCTGTACAANAACAGTATCTGACCCAACGGAGGATTGTCAAAGTACTTGGAT
CACTGATAATGCTTTTCCANAACCCCTCAATGTAAAATTTAGNGGATATCCAAGTACGTC
TGGAGGTGATGTTGTTTTTACTGGCCTTTTTTTAANNNNNNNNNN
Length of 5' end seq. 465
3' end seq. ID SHL846Z
3' end seq. 
>SHL846Z.Seq
NNNNNNNNNNCTTTGTTTCAACATTAATTGGAGATGATTTGGGTCCAAATACAACATTAA
CATATTTTGAACCAAGAATCACAGTTATTCCAACAGTTAAAAATAAAAAAGATGGTATTT
CAATAAGAGTGGGTGGTGTTAGTTTATCAGGTATTATAAATGCAAGTTTAGGAATTTCAT
CAGAAAATGTTTCTCTTTCATGTGATTTACAATGTAGTTTATCTCCAAATGAAACATTTT
ATTTAAGTAATCCAATACTAAGTTCAAATGAAAAAGATATAACAAATAGTACTGATTGTT
TATCATGTCATTCAATGAATTCAATTGTTGTTGATGAAACATCAGGAGTATTATATCTCC
AATTAGGCCCAACATCATATCATTATGATGTTAAAATCGAAGAAATTCAATCATCATTAA
ATCCATCATCATCAAATGGTGGTGAAAGAAAATCATCAAAACTATCAGGTGGTGCAATTG
CTGGTATTACAATTGGTTGTGTTGCTGGTGCTGGTGCTTTAGTTGGTTCTGTCTTTTATT
TTAAATTAATCACTCGTGTTAAAAAAGCATTCAATTAATATTTTAATAATAGTATTTGAT
GGTGTAAATTACAAATTGGGATCCAAATTACAGTAGATCATACACAAATTCAAGTGAATA
ACTTTAATTACACTGGAAAATATTAATTAATGTATTATAAAAAATATTCATAACATTTNA
ACNGTATCTTATNATTATAANATCATTTTA
Length of 3' end seq. 750
Connected seq. ID SHL846P
Connected seq. 
>SHL846P.Seq
ATTTTTTTTTTGAACACATGAAATGATTCATAAAATGTATTTTTTTTTAATACTTTTATT
TTCATTATTTATTATAGTTTATTCGGCACCAAATCGGGTAACCAGAAATGAAACTTCTAT
AGTATATACCTATTCCCTTGATAGNGATTATTATACTCGTTTTGTTATGTATCTAAATGC
TACTACCTTAAAAACTGATATAGCTCCAAATTATTTTGATTGCAGCCAAATTGTCAACTC
AAANANATATTGNGTATTCCATTTTGCTGATTCATTTTCAANATTATGGGGAGCCGTTTA
CAGTAAAGTCTGTACAANAACAGTATCTGACCCAACGGAGGATTGTCAAAGTACTTGGAT
CACTGATAATGCTTTTCCANAACCCCTCAATGTAAAATTTAGNGGATATCCAAGTACGTC
TGGAGGTGATGTTGTTTTTACTGGCCTTTTTTTAA----------CTTTGTTTCAACATT
AATTGGAGATGATTTGGGTCCAAATACAACATTAACATATTTTGAACCAAGAATCACAGT
TATTCCAACAGTTAAAAATAAAAAAGATGGTATTTCAATAAGAGTGGGTGGTGTTAGTTT
ATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAGAAAATGTTTCTCTTTCATGTGA
TTTACAATGTAGTTTATCTCCAAATGAAACATTTTATTTAAGTAATCCAATACTAAGTTC
AAATGAAAAAGATATAACAAATAGTACTGATTGTTTATCATGTCATTCAATGAATTCAAT
TGTTGTTGATGAAACATCAGGAGTATTATATCTCCAATTAGGCCCAACATCATATCATTA
TGATGTTAAAATCGAAGAAATTCAATCATCATTAAATCCATCATCATCAAATGGTGGTGA
AAGAAAATCATCAAAACTATCAGGTGGTGCAATTGCTGGTATTACAATTGGTTGTGTTGC
TGGTGCTGGTGCTTTAGTTGGTTCTGTCTTTTATTTTAAATTAATCACTCGTGTTAAAAA
AGCATTCAATTAATATTTTAATAATAGTATTTGATGGTGTAAATTACAAATTGGGATCCA
AATTACAGTAGATCATACACAAATTCAAGTGAATAACTTTAATTACACTGGAAAATATTA
ATTAATGTATTATAAAAAATATTCATAACATTTNAACNGTATCTTATNATTATAANATCA
TTTTA
Length of connected seq. 1195
Full length Seq ID -
Full length Seq. -
Length of full length seq. -