SHL840
Library SH
(Link to library)
Clone ID SHL840
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID SHL840P
(Link to Original site)
Representative DNA sequence
>SHL840 (SHL840Q) /CSM/SH/SHL8-B/SHL840Q.Seq.d/
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGAXXXXXXXXXXTG
AATAATATGTACCNTTCAGAGTTGGTGACAGAGTTGNAAAGAGACATTAGACAATTGGGT
GTCTCCGAGACTGGTTTAACNTTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGG
TAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGC
TATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGA
TGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCT
TTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTAC
AGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTT
GGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAA
AGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTA
TATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTAT
TCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTAT
CAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATANAA
TTATTTAAATATTCTTTCNCGGGTTCAAG
sequence update 2002.10.25
Translated Amino Acid sequence
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINL---

---NNMYXSELVTELXRDIRQLGVSETGLTFFRSF*tfnhsyw*cygly*igqirwftll
**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*il*dvgkr
fryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih**wlcnw
fglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*kdskfpt
rixlfkysfxgs


Translated Amino Acid sequence (All Frames)
Frame A:
iikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnled
rrsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfk
rnsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sici
dlsitkeytytil*ecsftscllfnd*yifsinkfr---

---*iictxqsw*qsxketldnwvsprlv*xfldhfrllithignamgyirlvrsgglhy
csnaikfvpdlkkipkfqdltskdalspetiqastnldsiihnlsnnlsegteyfkmlvn
vfatefrnianqhlknfyiivpalasnyidhminskdklfkkskaigaeallftddgfai
glayilklldqnkdfdslhwfdriqlkcetdqkrmlaeanakgikedqnhlaikkiqnfq
qexnylnilsrvq

Frame B:
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINL---

---e*yvpfrvgdrvxkrh*tigclrdwfnxf*iildf*slilvmlwvildwsdpvvyti
vvmlsnsyqt*krfqnski*pqkmpshlkqfklvpiwiqsfiifqiiyqrvlntlrcw*t
fslqsfeislini*risissylpwpqitsii*sivkinslrnqkqsvlklyyslmmalql
vwlis*ny*ikikisilfigsivfn*nvklikrecwlkqmqkvskrikii*qlkrfkisn
knxii*iffxgfk

Frame C:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyfqy**i*---

---NNMYXSELVTELXRDIRQLGVSETGLTFFRSF*tfnhsyw*cygly*igqirwftll
**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*il*dvgkr
fryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih**wlcnw
fglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*kdskfpt
rixlfkysfxgs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL840 (SHL840Q) /CSM/SH/SHL8-B/SHL840Q.Seq.d/ 2668 0.0
VHB821 (VHB821Q) /CSM/VH/VHB8-A/VHB821Q.Seq.d/ 1413 0.0
SHD280 (SHD280Q) /CSM/SH/SHD2-D/SHD280Q.Seq.d/ 1413 0.0
AHN345 (AHN345Q) /CSM/AH/AHN3-B/AHN345Q.Seq.d/ 1413 0.0
VHP871 (VHP871Q) /CSM/VH/VHP8-C/VHP871Q.Seq.d/ 1400 0.0
VHK424 (VHK424Q) /CSM/VH/VHK4-A/VHK424Q.Seq.d/ 1400 0.0
VHI518 (VHI518Q) /CSM/VH/VHI5-A/VHI518Q.Seq.d/ 1400 0.0
VHB614 (VHB614Q) /CSM/VH/VHB6-A/VHB614Q.Seq.d/ 1400 0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/ 1400 0.0
VHA684 (VHA684Q) /CSM/VH/VHA6-D/VHA684Q.Seq.d/ 1400 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescriptCanis familiaris cDNA clone CH3#002_C07 5', mRNA sequence. 38 0.001 3
CP000263|CP000263.1 Buchnera aphidicola str. Cc (Cinara cedri), complete genome. 36 0.016 15
BY464171|BY464171.1 Mus musculus 15 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:K630150M24, 3' end partial sequence. 42 0.034 2
AC168241|AC168241.2 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces. 52 0.042 1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 32 0.10 13
BB822673|BB822673.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830022O04, 3' end partial sequence. 32 0.14 4
AK113047|AK113047.1 Ciona intestinalis cDNA, clone:ciad002a21, full insert sequence. 48 0.15 2
DN287505|DN287505.1 1241755 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 34 0.16 3
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16. 50 0.16 1
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09. 50 0.16 1
dna update 2007. 3.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 423 e-126
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 218 5e-55
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 218 5e-55
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 218 5e-55
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 216 2e-54
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 216 2e-54
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN... 216 2e-54
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 216 2e-54
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 162 3e-38
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746... 157 8e-37
protein update 2009. 5.31
PSORT

psg: 0.79 gvh: 0.25 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHL840 is nuc

5' end seq. ID SHL840F
5' end seq.
>SHL840F.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGANNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID SHL840Z
3' end seq.
>SHL840Z.Seq
NNNNNNNNNNTGAATAATATGTACCNTTCAGAGTTGGTGACAGAGTTGNAAAGAGACATT
AGACAATTGGGTGTCTCCGAGACTGGTTTAACNTTTTTTAGATCATTTTAGACTTTTAAT
CACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTA
TTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTT
AACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAAT
CATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAA
CGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCAT
CGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTT
TAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAAT
TGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTG
GTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAA
TGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCA
ACAAGAATANAATTATTTAAATATTCTTTCNCGGGTTCAAG
Length of 3' end seq. 761
Connected seq. ID SHL840P
Connected seq.
>SHL840P.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGA----------TG
AATAATATGTACCNTTCAGAGTTGGTGACAGAGTTGNAAAGAGACATTAGACAATTGGGT
GTCTCCGAGACTGGTTTAACNTTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGG
TAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGC
TATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGA
TGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCT
TTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTAC
AGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTT
GGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAA
AGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTA
TATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTAT
TCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTAT
CAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATANAA
TTATTTAAATATTCTTTCNCGGGTTCAAG
Length of connected seq. 1399
Full length Seq ID -
Full length Seq. -
Length of full length seq. -