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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL792
Library SH
(Link to library)
Clone ID SHL792
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11234-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHL792 (SHL792Q) /CSM/SH/SHL7-D/SHL792Q.Seq.d/
XXXXXXXXXXGGTGGATCNCTTCATCGTAGANCTGNTAGTAATAGTGGTGATGGTATTGC
AAGTGGTATTGGTTCAAGAATTGGCGGTNCAAATACTAGTGGTGGTGGTGGTGGTGGTAA
TAATGATGGAATTTCAAATATTACAAGTAATTTTGGTAATACTTTAACAGTTGATGGTGC
AGGTGGTAATTTATCAGGTTCAAAAGTTACACCAATTCCAACTAGAAAAGTTCATACTCA
TTATCAACAATCAAATATAAATAGACAACGACATCTTCAACCTTTAACAACCAAAGAAGA
ATATGAAGCATCAAAAGATACTAAAACAAACCATTTGTTTCATTTTTAAATGTTGAAACT
GCTTCCTATGATGAACAATCACATTATTTAATAGATATTTTAACAGATTATCAAGTGATG
GTAGATCAAAAAGG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---GSLHRRXXSNSGDGIASGIGSRIGGXNTSGGGGGGNNDGISNITSNFGNTLTVDGAG
GNLSGSKVTPIPTRKVHTHYQQSNINRQRHLQPLTTKEEYEASKDTKTNHLFHF*mlkll
pmmnnhii**if*qiik*w*ikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---vdxfivxlxvivvmvlqvvlvqelavqilvvvvvvvimmefqilqvilvil*qlmvq
vviyqvqklhqfqlekfiliinnqi*idndifnl*qpkknmkhqkilkqticfifkc*nc
fl**titlfnryfnrlssdgrskr


Frame B:
---wixss*xx***w*wyckwywfknwrxky*wwwwww***wnfkyyk*fw*yfns*wcr
w*firfksytnsn*kssyslstikyk*tttsstfnnqrri*sikry*nkpfvsflnveta
sydeqshylidiltdyqvmvdqk


Frame C:
---GSLHRRXXSNSGDGIASGIGSRIGGXNTSGGGGGGNNDGISNITSNFGNTLTVDGAG
GNLSGSKVTPIPTRKVHTHYQQSNINRQRHLQPLTTKEEYEASKDTKTNHLFHF*mlkll
pmmnnhii**if*qiik*w*ikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL792 (SHL792Q) /CSM/SH/SHL7-D/SHL792Q.Seq.d/                        626   e-179
VHJ358 (VHJ358Q) /CSM/VH/VHJ3-C/VHJ358Q.Seq.d/                        589   e-167
SLA289 (SLA289Q) /CSM/SL/SLA2-D/SLA289Q.Seq.d/                        589   e-167
SHB186 (SHB186Q) /CSM/SH/SHB1-D/SHB186Q.Seq.d/                        589   e-167
CHL119 (CHL119Q) /CSM/CH/CHL1-A/CHL119Q.Seq.d/                        589   e-167
CFC289 (CFC289Q) /CSM/CF/CFC2-D/CFC289Q.Seq.d/                        589   e-167
AHQ540 (AHQ540Q) /CSM/AH/AHQ5-B/AHQ540Q.Seq.d/                        589   e-167
AHM233 (AHM233Q) /CSM/AH/AHM2-B/AHM233Q.Seq.d/                        589   e-167
AHF135 (AHF135Q) /CSM/AH/AHF1-B/AHF135Q.Seq.d/                        589   e-167
AHB609 (AHB609Q) /CSM/AH/AHB6-A/AHB609Q.Seq.d/                        589   e-167
own update 2003.10.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EB441928|EB441928.1 KN6B.110J10F.060106T7 KN6B Nicotiana tabacum cDNA clone KN6B.110J10, mRNA sequence.    46   0.75   1
AC162044|AC162044.2 Bos taurus clone CH240-113M22, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    46   0.75   1
AC160294|AC160294.2 Bos taurus clone CH240-86B2, *** SEQUENCING IN PROGRESS ***, 53 unordered pieces.    46   0.75   1
CC082634|CC082634.1 CSU-K33r.2A12.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.2A12, DNA sequence.    46   0.75   1
DW712669|DW712669.1 JARO001001B07 001 Bothrops jararaca cDNA, mRNA sequence.    38   0.85   2
AQ788363|AQ788363.1 HS_3135_A2_E06_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3135 Col=12 Row=I, genomic survey sequence.    34   2.0    2
CT528715|CT528715.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    32   2.0    2
CT521459|CT521459.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    32   2.1    2
AC194581|AC194581.4 Canis familiaris chromosome 1 clone XX-309C2 map 1, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    44   3.0    1
AC128085|AC128085.2 Rattus norvegicus clone CH230-88G6, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   3.0    1
dna update 2007. 2. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001091_1014(CP001091|pid:none) Actinobacillus pleuropneumoniae...    32   6.6
protein update 2009. 1.19
PSORT 

 psg: 0.64  gvh: 0.34  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.15
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SHL792 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHL792Z
3' end seq. 
>SHL792Z.Seq
NNNNNNNNNNGGTGGATCNCTTCATCGTAGANCTGNTAGTAATAGTGGTGATGGTATTGC
AAGTGGTATTGGTTCAAGAATTGGCGGTNCAAATACTAGTGGTGGTGGTGGTGGTGGTAA
TAATGATGGAATTTCAAATATTACAAGTAATTTTGGTAATACTTTAACAGTTGATGGTGC
AGGTGGTAATTTATCAGGTTCAAAAGTTACACCAATTCCAACTAGAAAAGTTCATACTCA
TTATCAACAATCAAATATAAATAGACAACGACATCTTCAACCTTTAACAACCAAAGAAGA
ATATGAAGCATCAAAAGATACTAAAACAAACCATTTGTTTCATTTTTAAATGTTGAAACT
GCTTCCTATGATGAACAATCACATTATTTAATAGATATTTTAACAGATTATCAAGTGATG
GTAGATCAAAAAGG
Length of 3' end seq. 434
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -