>AFJ817 (AFJ817Q) /CSM/AF/AFJ8-A/AFJ817Q.Seq.d/
ATATTTTATTTTACAACTATGCAAATAGAAAGGCTAGTATATGTATATTAAATTTATATT
TATATAAATCCTAAATTAATAATAATAATAAAAAAAATAAAAAAAACTCGATCAGTTGGT
TTGTTCGCATCATTATTTTATTTTTTTTCCAAAAAAAAATATAAAAAAAAAAXXXXXXXX
XX

ifyfttmqierlvyvy*IYIYINPKLIIIIKKIKKTRSVGLFASLFYFFSKKKYKKK---

Frame A:
ifyfttmqierlvyvy*IYIYINPKLIIIIKKIKKTRSVGLFASLFYFFSKKKYKKK---


Frame B:
yfilqlck*kg*ymyikfifi*iln*****kk*kkldqlvcshhyfiffpkknikk---


Frame C:
ilfynyanrkasicilnlylyks*innnnkknkknsiswfvriiilfffqkki*kk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL362 (SFL362Q) /CSM/SF/SFL3-C/SFL362Q.Seq.d/                         88   5e-17
SFF870 (SFF870Q) /CSM/SF/SFF8-C/SFF870Q.Seq.d/                         88   5e-17
SFB280 (SFB280Q) /CSM/SF/SFB2-D/SFB280Q.Seq.d/                         88   5e-17
SFB185 (SFB185Q) /CSM/SF/SFB1-D/SFB185Q.Seq.d/                         88   5e-17
CHP686 (CHP686Q) /CSM/CH/CHP6-D/CHP686Q.Seq.d/                         88   5e-17
CFE269 (CFE269Q) /CSM/CF/CFE2-C/CFE269Q.Seq.d/                         88   5e-17
CFD526 (CFD526Q) /CSM/CF/CFD5-B/CFD526Q.Seq.d/                         88   5e-17
AFO726 (AFO726Q) /CSM/AF/AFO7-B/AFO726Q.Seq.d/                         88   5e-17
AFO549 (AFO549Q) /CSM/AF/AFO5-C/AFO549Q.Seq.d/                         88   5e-17
AFO315 (AFO315Q) /CSM/AF/AFO3-A/AFO315Q.Seq.d/                         88   5e-17

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    88  1e-26  2
BD042307|BD042307.1 Sequence tag and encoded human protein.       34  0.28  2
AL784375|AL784375.1 Xenopus tropicalis EST, clone TNeu065d02 5'.    36  0.29  2
BM141566|BM141566.1 ZFT430 Zebrafish Testis Danio rerio cDNA 5', mRNA sequence.    38  0.34  2
BF555798|BF555798.1 UI-R-A1-ej-a-01-0-UI.r1 UI-R-A1 Rattus norvegicus cDNA clone UI-R-A1-ej-a-01-0-UI 5', mRNA sequence.    32  1.0  3
AC144375|AC144375.9 Medicago truncatula clone mth2-11p13, WORKING DRAFT SEQUENCE, 2 ordered pieces.    42  1.1  2
BE213059|BE213059.1 IpBrn01690 Brain cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    34  1.1  2
AC113504|AC113504.4 Mus musculus clone RP23-370G17, WORKING DRAFT SEQUENCE, 8 unordered pieces.    38  1.6  2
AZ522375|AZ522375.1 206PbA06 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    34  1.6  2
AL973423|AL973423.1 Danio rerio genomic clone DKEY-23C20, genomic survey sequence.    34  1.8  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 118,413,707

 psg: 0.76  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for AFJ817 is nuc

>AFJ817F.Seq
ATATTTTATTTTACAACTATGCAAATAGAAAGGCTAGTATATGTATATTAAATTTATATT
TATATAAATCCTAAATTAATAATAATAATAAAAAAAATAAAAAAAACTCGATCAGTTGGT
TTGTTCGCATCATTATTTTATTTTTTTTCCAAAAAAAAATATAAAAAAAAAA--------
--