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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL778
Library SH
(Link to library)
Clone ID SHL778
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13035-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHL778 (SHL778Q) /CSM/SH/SHL7-D/SHL778Q.Seq.d/
AATTTATTTTATCATTAATTATTTAGTTTGGGAAAAAAAGAAATAAATACTTAATCCTTG
CTTGTAATAGATTCAAACTTTAAAATAATAAAAATAAATAATTAAAAATATTTTAAAAAA
AATATAAAAGTATAAAATATAAAAAAATATTTGGAATAGAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
filslii*FGKKRNKYLILACNRFKL*nnknk*lkif*kkyksikykkifgiekk---
Translated Amino Acid sequence (All Frames) 
Frame A:
nlfyh*lfslgkkeint*sllvidsnfkiikinn*kyfkknikv*nikkyle*kkk---


Frame B:
iyfiinylvwekkk*ilnpcl**iqtlk**k*iiknilkki*kyki*kniwnrkk---


Frame C:
filslii*FGKKRNKYLILACNRFKL*nnknk*lkif*kkyksikykkifgiekk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL778 (SHL778Q) /CSM/SH/SHL7-D/SHL778Q.Seq.d/                         64   7e-10
CHR522 (CHR522Q) /CSM/CH/CHR5-A/CHR522Q.Seq.d/                         64   7e-10
SHH603 (SHH603Q) /CSM/SH/SHH6-A/SHH603Q.Seq.d/                         56   2e-07
CHJ490 (CHJ490Q) /CSM/CH/CHJ4-D/CHJ490Q.Seq.d/                         54   7e-07
CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/                         36   0.16
VSB740 (VSB740Q) /CSM/VS/VSB7-B/VSB740Q.Seq.d/                         34   0.65
SSD392 (SSD392Q) /CSM/SS/SSD3-D/SSD392Q.Seq.d/                         34   0.65
SSA115 (SSA115Q) /CSM/SS/SSA1-A/SSA115Q.Seq.d/                         34   0.65
SLI504 (SLI504Q) /CSM/SL/SLI5-A/SLI504Q.Seq.d/                         34   0.65
VHG592 (VHG592Q) /CSM/VH/VHG5-D/VHG592Q.Seq.d/                         32   2.6
own update 2004. 8.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U32466|U32466.1 Speyeria atlantis NADH dehydrogenase subunit 1 (ND1) gene, mitochondrial gene encoding mitochondrial protein, partial cds.    46   0.29   1
AJ505593|AJ505593.1 Alcis repandata mitochondrion 16S rRNA gene (partial), tRNA-Leu gene and nd1 gene (partial), isolate 00372.    46   0.29   1
AJ438725|AJ438725.1 Alcis repandata mitochondrion nd1 gene (partial), 16S rRNA gene  (partial) and tRNA-Leu gene, isolate DNATAX-00372.    46   0.29   1
AJ416938|AJ416938.1 Alcis repandata mitochondrion nd1 gene (partial), tRNA-Leu gene and  16S rRNA gene (partial).    46   0.29   1
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    46   0.29   1
DT614787|DT614787.1 ACAH-aaa10b06.g1 Hydra_EST_UCI-10 Hydra magnipapillata cDNA 5', mRNA sequence.    44   1.1    1
DT611896|DT611896.1 ACAG-aaa48f05.g1 Hydra_EST_UCI-9 Hydra magnipapillata cDNA 5', mRNA sequence.    44   1.1    1
DT605700|DT605700.1 ACAH-aaa75d06.g1 Hydra_EST_UCI-10 Hydra magnipapillata cDNA 5', mRNA sequence.    44   1.1    1
DR435525|DR435525.1 ACAB-aaa32c12.g1 Hydra UCI6- barcoded EST's Hydra magnipapillata cDNA 5', mRNA sequence.    44   1.1    1
DN815451|DN815451.2 ACAC-aab62k12.g1 Hydra EST UCI 7 Hydra magnipapillata cDNA 5', mRNA sequence.    44   1.1    1
dna update 2007. 2. 7
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 109,348,677
protein update 2009. 5.31
PSORT -
5' end seq. ID SHL778F
5' end seq. 
>SHL778F.Seq
AATTTATTTTATCATTAATTATTTAGTTTGGGAAAAAAAGAAATAAATACTTAATCCTTG
CTTGTAATAGATTCAAACTTTAAAATAATAAAAATAAATAATTAAAAATATTTTAAAAAA
AATATAAAAGTATAAAATATAAAAAAATATTTGGAATAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 179
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -