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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL762
Library SH
(Link to library)
Clone ID SHL762
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SHL762P
(Link to Original site)
Representative DNA sequence 
>SHL762 (SHL762Q) /CSM/SH/SHL7-C/SHL762Q.Seq.d/
AATTTTTTTTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATA
TAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTT
GAGAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAANCNNAAAAAAA
AAANNCCNNNAAAAAAAXXXXXXXXXXAAATGTGTAGCTCAAGATTCTCATTGTGATGAT
GGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAA
GTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTT
TACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGT
GCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGT
TCTTCCGATTGGTATTGTATTGAAGCTCAACGTGATGCAAAATATGGTTGCATTCAATTC
GATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACT
GCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTT
TGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCT
GTTGTTTTAGGTGCTGCTACATNTGCGGGTAANNNNGGTTATG
sequence update 2002.10.25
Translated Amino Acid sequence 
ifffv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKIKKKKKKKKPXKXXKK
XXXKK---

---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQRDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
TXAGXXGY
Translated Amino Acid sequence (All Frames) 
Frame A:
nfffcmiiiiqiknilykyi*iyik*k***nkfniiknffekkkn*kkkkkkktxkxxkk
kxxxk---

---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQRDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
TXAGXXGY

Frame B:
ifffv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKIKKKKKKKKPXKXXKK
XXXKK---

---nv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpwk
vvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvll
iivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*vll
hxrvxxvm

Frame C:
ffflydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkklkkkkkkknpkxxkkk
xpxkk---

---mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylgr
wl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*sst*ckiwlhsir*kmcs*
***msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrccy
xcg*xxl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL762 (SHL762Q) /CSM/SH/SHL7-C/SHL762Q.Seq.d/                       1074   0.0
CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/                       1059   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1059   0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/                       1059   0.0
SHL603 (SHL603Q) /CSM/SH/SHL6-A/SHL603Q.Seq.d/                       1059   0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/                       1059   0.0
SHK812 (SHK812Q) /CSM/SH/SHK8-A/SHK812Q.Seq.d/                       1059   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1059   0.0
SHK126 (SHK126Q) /CSM/SH/SHK1-B/SHK126Q.Seq.d/                       1059   0.0
SHJ815 (SHJ815Q) /CSM/SH/SHJ8-A/SHJ815Q.Seq.d/                       1059   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   0.004  4
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.086  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.086  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.086  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.086  1
DY275609|DY275609.1 IC0AAA39DE01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.    48   0.34   1
DY267839|DY267839.1 IC0AAA22CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.    48   0.34   1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.39   2
CP000302|CP000302.1 Shewanella denitrificans OS217, complete genome.    36   0.58   2
dna update 2007. 2. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                343   3e-93
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   149   1e-34
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   145   1e-33
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   135   1e-30
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                125   1e-27
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                106   9e-22
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 93   1e-17
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    67   5e-10
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    64   7e-09
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    62   3e-08
protein update 2009. 5.31
PSORT 

 psg: 0.21  gvh: 0.50  alm: 0.19  top: 0.60  tms: 0.07  mit: 0.36  mip: 0.02
 nuc: 0.46  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SHL762 is cyt
5' end seq. ID SHL762F
5' end seq. 
>SHL762F.Seq
AATTTTTTTTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATA
TAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTT
GAGAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAANCNNAAAAAAA
AAANNCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 207
3' end seq. ID SHL762Z
3' end seq. 
>SHL762Z.Seq
NNNNNNNNNNAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACTGA
TAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCA
AACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGA
AGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTA
TTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTG
TATTGAAGCTCAACGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCC
TGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGA
TGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTT
AGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGC
TACATNTGCGGGTAANNNNGGTTATG
Length of 3' end seq. 566
Connected seq. ID SHL762P
Connected seq. 
>SHL762P.Seq
AATTTTTTTTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATA
TAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTT
GAGAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAANCNNAAAAAAA
AAANNCCNNNAAAAAAA----------AAATGTGTAGCTCAAGATTCTCATTGTGATGAT
GGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAA
GTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTT
TACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGT
GCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGT
TCTTCCGATTGGTATTGTATTGAAGCTCAACGTGATGCAAAATATGGTTGCATTCAATTC
GATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACT
GCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTT
TGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCT
GTTGTTTTAGGTGCTGCTACATNTGCGGGTAANNNNGGTTATG
Length of connected seq. 753
Full length Seq ID -
Full length Seq. -
Length of full length seq. -