>SHL742 (SHL742Q) /CSM/SH/SHL7-B/SHL742Q.Seq.d/
XXXXXXXXXXTCAAGGTATGGAAATGCAAAAGAGAATAACCAACTATCGTCCATCATGGA
ATTTAACCGTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACA
TTCAAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTG
CATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATG
GTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGA
TTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTAT
CACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTC
AATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGA
TTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATA
TTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAA
CTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAA
AATTATCAAATTTATCAAGATTAAAATGGAAAACTGTTGATGGTTAACTGC

---QGMEMQKRITNYRPSWNLTVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCA
SLRDGQLDMMMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLS
HPLLPMFTTTQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENI
YQIDGQDSQDPQTITLDLSTIFSTITITSATEMNLTGVQKLSNLSRLKWKTVDG*l

Frame A:
---QGMEMQKRITNYRPSWNLTVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCA
SLRDGQLDMMMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLS
HPLLPMFTTTQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENI
YQIDGQDSQDPQTITLDLSTIFSTITITSATEMNLTGVQKLSNLSRLKWKTVDG*l


Frame B:
---kvwkckre*ptivhhgi*pwfnqpvvimyl*mllptfkilinhynsplslievvdvh
r*emvnwi**civvl*kmmvvvlvnq*msqlkslqlvn*fsmifqvmlnliivllhslyh
ihysqclqplnnlqtigilnikvfthh*lqphlyqmv*rfklyng*iikiipyfyvlkif
iklmvkihkihklsl*ifqlsfqqlqsllqlk*i*lvfknyqiyqd*ngkllmvnc


Frame C:
---rygnakennqlssimefnrgstnqw*lctcecyclhsrs*siitihhch**kswmci
vkrwsigyddassyfer*wswcwstne*vnsnryn**idfp*yfklcsislsscctlfit
sitpnvynhstifkrlefsisrclltidfsltftkwfkdsnstmvr*sr*yhtfty*kyl
sn*wsrftrstnyhfrsfnylfnnynhfcn*nefnwcskiikfikikmenc*wlt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL742 (SHL742Q) /CSM/SH/SHL7-B/SHL742Q.Seq.d/                       1390   0.0
VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/                       1376   0.0
VHP443 (VHP443Q) /CSM/VH/VHP4-B/VHP443Q.Seq.d/                       1376   0.0
VHO790 (VHO790Q) /CSM/VH/VHO7-D/VHO790Q.Seq.d/                       1376   0.0
VHO689 (VHO689Q) /CSM/VH/VHO6-D/VHO689Q.Seq.d/                       1376   0.0
VHK690 (VHK690Q) /CSM/VH/VHK6-D/VHK690Q.Seq.d/                       1376   0.0
VHD562 (VHD562Q) /CSM/VH/VHD5-C/VHD562Q.Seq.d/                       1376   0.0
VHB462 (VHB462Q) /CSM/VH/VHB4-C/VHB462Q.Seq.d/                       1376   0.0
VHB425 (VHB425Q) /CSM/VH/VHB4-B/VHB425Q.Seq.d/                       1376   0.0
VHB333 (VHB333Q) /CSM/VH/VHB3-B/VHB333Q.Seq.d/                       1376   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds.  1352   0.0    1
AP007341|AP007341.1 Lotus japonicus genomic DNA, chromosome 2, clone:LjT35G04, TM0425.    40   0.11   2
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    32   0.13   8
AL162752|AL162752.2 Neisseria meningitidis serogroup A strain Z2491 complete genome;  segment 1/7.    44   0.97   2
EG619833|EG619833.1 EMBRYOF088227O8 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061028989863, mRNA sequence.    46   1.2    1
AM025232|AM025232.1 Bos indicus 3' EST, clone C0005915l21.         34   3.2    2
BH703301|BH703301.1 BOMNG55TR BO_2_3_KB Brassica oleracea genomic clone BOMNG55, DNA sequence.    40   3.6    2
AA382162|AA382162.1 EST95325 Activated T-cells II Homo sapiens cDNA 5' end, mRNA sequence.    40   4.4    2
EH243429|EH243429.1 JGI_ACAC13551.fwd ACAC Phakopsora pachyrhizi TW72-1 germinating urediniospores on water surface (20C/16 hours/dark) Phakopsora pachyrhizi cDNA clone ACAC13551 5', mRNA sequence.    44   4.9    1
AV262947|AV262947.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930432P20, 3' end partial sequence.    44   4.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   397   e-109
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   397   e-109
BT036325_1(BT036325|pid:none) Zea mays full-length cDNA clone ZM...   108   2e-22
(Q29451) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   107   3e-22
AK068415_1(AK068415|pid:none) Oryza sativa Japonica Group cDNA c...   106   6e-22
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi...   101   2e-20
AB005230_20(AB005230|pid:none) Arabidopsis thaliana genomic DNA,...   101   2e-20
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20...   101   2e-20
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,...   100   4e-20
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet...   100   6e-20

 psg: 0.64  gvh: 0.51  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHL742 is cyt

>SHL742Z.Seq
NNNNNNNNNNTCAAGGTATGGAAATGCAAAAGAGAATAACCAACTATCGTCCATCATGGA
ATTTAACCGTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACA
TTCAAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTG
CATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATG
GTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGA
TTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTAT
CACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTC
AATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGA
TTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATA
TTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAA
CTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAA
AATTATCAAATTTATCAAGATTAAAATGGAAAACTGTTGATGGTTAACTGC