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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL729
Library SH
(Link to library)
Clone ID SHL729
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SHL729P
(Link to Original site)
Representative DNA sequence 
>SHL729 (SHL729Q) /CSM/SH/SHL7-B/SHL729Q.Seq.d/
AAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAA
ATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAANTAAAAAAAAAAAAAAA
AAAAAAAAAAANCCNAAAAAAANCNAAAAAAAAAACCCNNNAAAAAAAXXXXXXXXXXTT
GGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTAC
AGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCT
TGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCT
TCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGAT
AGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCT
ATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGT
CAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGCTGTTGTAGTTGGTGCTGTT
GTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAA
GGNCAATGTTATGGC
sequence update 2002.10.25
Translated Amino Acid sequence 
klkiyyiniykyilnknnnkinli**KIFLRKKKXKKKKKKKKXPKKXXKKNPXKK---

---GQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDR
VCSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKP
FVCQKAALVSTAVIASAVVVGAVVLGAAIFAGKKGYDAWKTSQGQCYG
Translated Amino Acid sequence (All Frames) 
Frame A:
klkiyyiniykyilnknnnkinli**KIFLRKKKXKKKKKKKKXPKKXXKKNPXKK---

---lvnalklqllnviwvinvwftvvpwkvvvmqlnvfvqtlvlvklvivnlvsvvn*ri
efvlpigivlklnvmqnmvafnsiedvlliivnvkkvsv*tillsvkmmenvflkimiqn
hlfvkkll*fqllllqvll*lvllf*vllylrvrkvmmlgkqvkxnvm

Frame B:
n*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkkkkkkkkxxkkxkkktxxk---

---wsmhsnsnc*m*fg**myglqlylgrwl*cnstclsklwcl*nwll*twfrl*ikg*
slffrlvly*ssm*ckiwlhsir*kmcs****msrrclckqycyr*k*wkmyf*rl*skt
iclskscfsfnccyckcccswcccfrccyicg*erl*clenksrxmlw

Frame C:
iknilykyi*iyik*k***nkfniiknffekkkx*kkkkkkkkxxkxxkkkpxkk---

---GQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDR
VCSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKP
FVCQKAALVSTAVIASAVVVGAVVLGAAIFAGKKGYDAWKTSQGQCYG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL729 (SHL729Q) /CSM/SH/SHL7-B/SHL729Q.Seq.d/                        979   0.0
AFH732 (AFH732Q) /CSM/AF/AFH7-B/AFH732Q.Seq.d/                        971   0.0
AHB701 (AHB701Q) /CSM/AH/AHB7-A/AHB701Q.Seq.d/                        965   0.0
AHB446 (AHB446Q) /CSM/AH/AHB4-B/AHB446Q.Seq.d/                        965   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                        955   0.0
SLB259 (SLB259Q) /CSM/SL/SLB2-C/SLB259Q.Seq.d/                        955   0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/                        955   0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/                        955   0.0
SHK230 (SHK230Q) /CSM/SH/SHK2-B/SHK230Q.Seq.d/                        955   0.0
SHG146 (SHG146Q) /CSM/SH/SHG1-B/SHG146Q.Seq.d/                        955   0.0
own update 2003. 6.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AJ548837|AJ548837.1 Dictyostelium discoideum mRNA for extracellular signalling molecule  DicA (dicA gene).    54   0.002  2
AJ548838|AJ548838.1 Dictyostelium discoideum dicA gene for extracellular signalling  molecule DicA, exons 1-2.    54   0.003  2
EB602522|EB602522.1 AGENCOURT_56935298 D. grimshawi EST Drosophila grimshawi cDNA clone 163144_D.GRIMSHAWI_CDNA-016_D11 3', mRNA sequence.    52   0.019  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.076  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.076  1
AC123852|AC123852.4 Mus musculus chromosome 6 clone RP23-326G23, complete sequence.    48   0.30   1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          42   4.2    2
EB200704|EB200704.1 PEG002-C-111796-501 Normalized Pedal-Pleural Ganglia Aplysia californica cDNA clone PEG002-C-111796 5', mRNA sequence.    44   4.7    1
EB189322|EB189322.1 PEG001-C-009321-501 Non-Normalized Pedal-Pleural Ganglia Aplysia californica cDNA clone PEG001-C-009321 5', mRNA sequence.    44   4.7    1
dna update 2007. 2. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                303   4e-81
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   150   4e-35
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   140   3e-32
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   130   5e-29
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                128   1e-28
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 97   4e-19
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 96   7e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    59   2e-07
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    54   3e-06
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    52   2e-05
protein update 2009. 5.31
PSORT 

 psg: 0.21  gvh: 0.57  alm: 0.19  top: 0.73  tms: 0.07  mit: 0.37  mip: 0.02
 nuc: 0.31  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SHL729 is nuc
5' end seq. ID SHL729F
5' end seq. 
>SHL729F.Seq
AAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAA
ATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAANTAAAAAAAAAAAAAAA
AAAAAAAAAAANCCNAAAAAAANCNAAAAAAAAAACCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 178
3' end seq. ID SHL729Z
3' end seq. 
>SHL729Z.Seq
NNNNNNNNNNTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAA
TGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCA
AACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGAT
AGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGC
ATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTA
AACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAA
CCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGCTGTTGTA
GTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTATGATGCTTGG
AAAACAAGTCAAGGNCAATGTTATGGC
Length of 3' end seq. 507
Connected seq. ID SHL729P
Connected seq. 
>SHL729P.Seq
AAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAA
ATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAANTAAAAAAAAAAAAAAA
AAAAAAAAAAANCCNAAAAAAANCNAAAAAAAAAACCCNNNAAAAAAA----------TT
GGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTAC
AGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCT
TGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCT
TCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGAT
AGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCT
ATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGT
CAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGCTGTTGTAGTTGGTGCTGTT
GTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAA
GGNCAATGTTATGGC
Length of connected seq. 665
Full length Seq ID -
Full length Seq. -
Length of full length seq. -