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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL713
Library SH
(Link to library)
Clone ID SHL713
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SHL713P
(Link to Original site)
Representative DNA sequence 
>SHL713 (SHL713Q) /CSM/SH/SHL7-A/SHL713Q.Seq.d/
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAAAANCCCNAAAAAA
AAANCCCNNNAAAAAAAXXXXXXXXXXGTAAATGTGTAGCTCAAGATTCTCATTGTGATG
ATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCC
AAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGG
TTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTG
GTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTT
GTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAAT
TCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATA
CTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTG
TTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTG
CTGTTGTTTTAGGTGCTGCTATA
sequence update 2002.10.25
Translated Amino Acid sequence 
lifv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKXKKKKKKKKPXKKXXKK
XPXKK---

---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
I
Translated Amino Acid sequence (All Frames) 
Frame A:
infcmiiiiqiknilykyi*iyik*k***nkfniiknffekkkx*kkkkkkktxkkxpkk
kxxxk---

---vnv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpw
kvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvl
liivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*vl
l

Frame B:
lifv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKXKKKKKKKKPXKKXXKK
XPXKK---

---*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylg
rwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs
****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrcc
y

Frame C:
*flydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkkkkkkknpkkxpxkk
xpxkk---

---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
I
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/                       1063   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1063   0.0
SHL713 (SHL713Q) /CSM/SH/SHL7-A/SHL713Q.Seq.d/                       1063   0.0
SHL665 (SHL665Q) /CSM/SH/SHL6-C/SHL665Q.Seq.d/                       1063   0.0
SHL603 (SHL603Q) /CSM/SH/SHL6-A/SHL603Q.Seq.d/                       1063   0.0
SHL544 (SHL544Q) /CSM/SH/SHL5-B/SHL544Q.Seq.d/                       1063   0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/                       1063   0.0
SHK812 (SHK812Q) /CSM/SH/SHK8-A/SHK812Q.Seq.d/                       1063   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1063   0.0
SHK126 (SHK126Q) /CSM/SH/SHK1-B/SHK126Q.Seq.d/                       1063   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   0.003  4
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.084  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.084  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.084  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.084  1
DY275609|DY275609.1 IC0AAA39DE01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.    48   0.33   1
DY267839|DY267839.1 IC0AAA22CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.    48   0.33   1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.37   2
CP000302|CP000302.1 Shewanella denitrificans OS217, complete genome.    36   0.56   2
dna update 2007. 2. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                348   1e-94
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   153   5e-36
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   150   4e-35
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   140   5e-32
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                130   5e-29
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                110   3e-23
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 97   4e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    72   2e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    68   3e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    66   1e-09
protein update 2009. 5.31
PSORT 

 psg: 0.21  gvh: 0.50  alm: 0.16  top: 0.60  tms: 0.07  mit: 0.36  mip: 0.02
 nuc: 0.52  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SHL713 is cyt
5' end seq. ID SHL713F
5' end seq. 
>SHL713F.Seq
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAAAANCCCNAAAAAA
AAANCCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 207
3' end seq. ID SHL713Z
3' end seq. 
>SHL713Z.Seq
NNNNNNNNNNGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACT
GATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACT
CAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTG
GAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGT
TATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTAT
TGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCT
CCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAAT
GATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCT
TTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCT
GCTATA
Length of 3' end seq. 546
Connected seq. ID SHL713P
Connected seq. 
>SHL713P.Seq
ATTAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAA
ATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAG
AAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAAAANCCCNAAAAAA
AAANCCCNNNAAAAAAA----------GTAAATGTGTAGCTCAAGATTCTCATTGTGATG
ATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCC
AAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGG
TTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTG
GTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTT
GTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAAT
TCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATA
CTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTG
TTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTG
CTGTTGTTTTAGGTGCTGCTATA
Length of connected seq. 733
Full length Seq ID -
Full length Seq. -
Length of full length seq. -