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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL605
Library SH
(Link to library)
Clone ID SHL605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16336-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHL605 (SHL605Q) /CSM/SH/SHL6-A/SHL605Q.Seq.d/
ATTATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTG
ACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTA
TAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAA
AATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTG
AAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAA
GTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCT
TATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAA
CCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACAC
ATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGC
TAAGACCAGCATTCCCAAAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTAT
CATGCTCAGTCAATGTGATTTGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
YFYIFIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQK
LTYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFL
SSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESL
RPAFPKLREKLDDPEPSVVSCSVNVI---
Translated Amino Acid sequence (All Frames) 
Frame A:
iififsftkny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpsk
n*hifkc*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqlikleris
yhrikvkpi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr
*dqhsqs*ernwmipshrlyhaqsm*f---


Frame B:
lflyfhspktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpk
iniysnvri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfl
iiesk*slfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisria
ktsipkvkreig*sraigcimlsqcd---


Frame C:
YFYIFIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQK
LTYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFL
SSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESL
RPAFPKLREKLDDPEPSVVSCSVNVI---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL605 (SHL605Q) /CSM/SH/SHL6-A/SHL605Q.Seq.d/                       1191   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1185   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1185   0.0
SHI615 (SHI615Q) /CSM/SH/SHI6-A/SHI615Q.Seq.d/                       1176   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1174   0.0
AHL367 (AHL367Q) /CSM/AH/AHL3-C/AHL367Q.Seq.d/                       1166   0.0
VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1158   0.0
CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/                       1158   0.0
AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/                       1158   0.0
AFG346 (AFG346Q) /CSM/AF/AFG3-B/AFG346Q.Seq.d/                       1158   0.0
own update 2003. 6.10
Homology vs DNA -
dna update 2006. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   240   3e-62
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   240   3e-62
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   240   3e-62
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   240   3e-62
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   238   1e-61
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   238   1e-61
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   238   1e-61
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   238   1e-61
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   238   1e-61
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   236   5e-61
protein update 2009. 5.31
PSORT 

 psg: 0.59  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHL605 is cyt
5' end seq. ID SHL605F
5' end seq. 
>SHL605F.Seq
ATTATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTG
ACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTA
TAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAA
AATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTG
AAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAA
GTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCT
TATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAA
CCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACAC
ATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGC
TAAGACCAGCATTCCCAAAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTAT
CATGCTCAGTCAATGTGATTTGNNNNNNNNNN
Length of 5' end seq. 632
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -