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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL542
Library SH
(Link to library)
Clone ID SHL542
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID SHL542P
(Link to Original site)
Representative DNA sequence 
>SHL542 (SHL542Q) /CSM/SH/SHL5-B/SHL542Q.Seq.d/
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAXXXXXXXXXXTT
GAATAATATGTACCNTTCCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGG
GTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTG
GTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATG
CTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAG
ATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATC
TTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTA
CAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCT
TGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAA
AAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTT
ATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTA
TTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTA
TCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATG
AATTATTTAAATATTCTTTCNCGGGTTCAAGAATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLD---

---LNNMYXSRVGDRVGKRH*tigclrdwfnlfrsf*tfnhsyw*cygly*igqirwftl
l**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*il*dvgk
rfryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih**wlcn
wfglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*kdskfp
tri*ii*iffxgfkn
Translated Amino Acid sequence (All Frames) 
Frame A:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyfqy**i*i---

---LNNMYXSRVGDRVGKRH*tigclrdwfnlfrsf*tfnhsyw*cygly*igqirwftl
l**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*il*dvgk
rfryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih**wlcn
wfglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*kdskfp
tri*ii*iffxgfkn

Frame B:
ikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledr
rsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkr
nsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicid
lsitkeytytil*ecsftscllfnd*yifsinkfr---

---*iictxpelvtelerdirqlgvsetgltfldhfrllithignamgyirlvrsgglhy
csnaikfvpdlkkipkfqdltskdalspetiqastnldsiihnlsnnlsegteyfkmlvn
vfatefrnianqhlknfyiivpalasnyidhminskdklfkkskaigaeallftddgfai
glayilklldqnkdfdslhwfdriqlkcetdqkrmlaeanakgikedqnhlaikkiqnfq
qeyelfkysfxgsri

Frame C:
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLD---

---e*yvpfqsw*qswketldnwvsprlv*pf*iildf*slilvmlwvildwsdpvvyti
vvmlsnsyqt*krfqnski*pqkmpshlkqfklvpiwiqsfiifqiiyqrvlntlrcw*t
fslqsfeislini*risissylpwpqitsii*sivkinslrnqkqsvlklyyslmmalql
vwlis*ny*ikikisilfigsivfn*nvklikrecwlkqmqkvskrikii*qlkrfkisn
knmnylnilsrvqef
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL542 (SHL542Q) /CSM/SH/SHL5-B/SHL542Q.Seq.d/                       2736   0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/                       1475   0.0
VHB619 (VHB619Q) /CSM/VH/VHB6-A/VHB619Q.Seq.d/                       1467   0.0
CHG465 (CHG465Q) /CSM/CH/CHG4-C/CHG465Q.Seq.d/                       1467   0.0
VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/                       1465   0.0
VHJ241 (VHJ241Q) /CSM/VH/VHJ2-B/VHJ241Q.Seq.d/                       1461   0.0
VHI658 (VHI658Q) /CSM/VH/VHI6-C/VHI658Q.Seq.d/                       1461   0.0
SHD893 (SHD893Q) /CSM/SH/SHD8-D/SHD893Q.Seq.d/                       1461   0.0
AHN345 (AHN345Q) /CSM/AH/AHN3-B/AHN345Q.Seq.d/                       1459   0.0
AHC187 (AHC187Q) /CSM/AH/AHC1-D/AHC187Q.Seq.d/                       1457   0.0
own update 2004.12.25
Homology vs DNA -
dna update 2006. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               486   e-135
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   239   1e-61
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   239   2e-61
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   239   2e-61
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   237   6e-61
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      237   6e-61
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   237   6e-61
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   237   6e-61
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   174   7e-42
CP000600_221(CP000600|pid:none) Ostreococcus lucimarinus CCE9901...   171   7e-41
protein update 2009. 5.31
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SHL542 is cyt
5' end seq. ID SHL542F
5' end seq. 
>SHL542F.Seq
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATANNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID SHL542Z
3' end seq. 
>SHL542Z.Seq
NNNNNNNNNNTTGAATAATATGTACCNTTCCAGAGTTGGTGACAGAGTTGGAAAGAGACA
TTAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAA
TCACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACT
ATTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATT
TAACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAA
TCATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAA
ACGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCA
TCGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCT
TTAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAA
TTGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATT
GGTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAA
ATGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCC
AACAAGAATATGAATTATTTAAATATTCTTTCNCGGGTTCAAGAATTT
Length of 3' end seq. 768
Connected seq. ID SHL542P
Connected seq. 
>SHL542P.Seq
AATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTC
AAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGC
AACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAG
AAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAA
TTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAA
TTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAG
AAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAAT
CATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTAT
CAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGA
TCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTG
TCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATA----------TT
GAATAATATGTACCNTTCCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGG
GTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTG
GTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATG
CTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAG
ATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATC
TTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTA
CAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCT
TGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAA
AAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTT
ATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTA
TTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTA
TCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATG
AATTATTTAAATATTCTTTCNCGGGTTCAAGAATTT
Length of connected seq. 1406
Full length Seq ID -
Full length Seq. -
Length of full length seq. -