SHL482
Library SH
(Link to library)
Clone ID SHL482
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14669-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHL482 (SHL482Q) /CSM/SH/SHL4-D/SHL482Q.Seq.d/
AATAAAAAAAGTAACTAATCTATAGATATATAAATTTTTTAATTTTAAATAATAAAAATA
TTTTTTAACACATTTTCCCCCTTTTTTTGAAAAATAAAGAGTTGTAGAATAAAAAAAAAA
XXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
*kk*LIYRYINFLILNNKNIF*hifplflknkel*nkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
nkksn*sidi*if*f*iikiffntfspff*kikscrikk---


Frame B:
ikkvtnl*iykffnfk**kyflthfppffek*rvve*kk---


Frame C:
*kk*LIYRYINFLILNNKNIF*hifplflknkel*nkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL482 (SHL482Q) /CSM/SH/SHL4-D/SHL482Q.Seq.d/ 44 5e-04

own update 2002.12.10
Homology vs DNA -
dna update 2006. 7.19
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 56,049,929
protein update 2009. 5.30
PSORT -
5' end seq. ID SHL482F
5' end seq.
>SHL482F.Seq
AATAAAAAAAGTAACTAATCTATAGATATATAAATTTTTTAATTTTAAATAATAAAAATA
TTTTTTAACACATTTTCCCCCTTTTTTTGAAAAATAAAGAGTTGTAGAATAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -