>AFJ783 (AFJ783Q) /CSM/AF/AFJ7-D/AFJ783Q.Seq.d/
CTTGTATATAAATTTTAAACAACAAAAATTTCAATTAATAATTTTTTTTATATATAAAAT
TTAACTCAAACATTAATAAAATGAATAACACACATTACACCGATAACAAGAGAGTTGTTG
TAAATAATAATAATCAACATAACCATAATCATAACCATAATAATAATAATAATAATAACA
ACAATAATAACAAAAGAGCTCCTTTATCAAATACACCAAAAAAACCCGTTTTCCAAGATG
CCGTCGTAGCCAAGTCAGATGTTGGTGAATTTCAAGGTGGTTACTTTATAATGTCTCCAA
ACGAAAATGAAAAAATAAAGAAACCAATTTCTCAAAGCAAATACTCACCACAAAGGAAGA
GATTACCAAATGTTAACCAATTAAATAATAATAGTGAAGAAACCAATATGGATATGAAAG
CTTTAAAACAACAACAACAACAACAATATATGCAAATTAAAAATAGACATCAACAATATC
ATCAACAATTCCAACAACAAAATCAACAACAACAAAATGATATTAGTATACTTCTAACAC
CTTTAATTAAAGAAACAAATTTAAATAATGATAATAATTTTTCACCAAAAAAATTAAATA
CATCAAATAACAAAATAAACACACCACCAAGATCAACTTCGCCAXXXXXXXXXX

ci*ilnnknfn**FFLYIKFNSNINKMNNTHYTDNKRVVVNNNNQHNHNHNHNNNNNNNN
NNNKRAPLSNTPKKPVFQDAVVAKSDVGEFQGGYFIMSPNENEKIKKPISQSKYSPQRKR
LPNVNQLNNNSEETNMDMKALKQQQQQQYMQIKNRHQQYHQQFQQQNQQQQNDISILLTP
LIKETNLNNDNNFSPKKLNTSNNKINTPPRSTS---

Frame A:
lvykf*ttkisinnffyi*nltqtlik*ithitpitrell*iiiinitiiitiiiiiiit
tiitkellyqihqknpfskmps*psqmlvnfkvvtl*clqtkmkk*rnqflkanthhkgr
dyqmltn*iiivkkpiwi*kl*nnnnnnnicklkidinniinnsnnkinnnkmilvyf*h
l*lkkqi*imiiifhqkn*ihqitk*thhqdqlr---


Frame B:
lyinfkqqkfqliiffiyki*lkh**ne*htlhr*qescck***st*p*s*p*******q
q**qkssfikytkktrfprcrrsqvrcw*isrwllynvskrk*knketnfskqilttkee
itkc*pik****rnqygyesfkttttttiyan*k*tstisstipttkstttk*y*ytsnt
fn*rnkfk****fftkkikyik*qnkhttkinfa---


Frame C:
ci*ilnnknfn**FFLYIKFNSNINKMNNTHYTDNKRVVVNNNNQHNHNHNHNNNNNNNN
NNNKRAPLSNTPKKPVFQDAVVAKSDVGEFQGGYFIMSPNENEKIKKPISQSKYSPQRKR
LPNVNQLNNNSEETNMDMKALKQQQQQQYMQIKNRHQQYHQQFQQQNQQQQNDISILLTP
LIKETNLNNDNNFSPKKLNTSNNKINTPPRSTS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ783 (AFJ783Q) /CSM/AF/AFJ7-D/AFJ783Q.Seq.d/                        426   e-118
SLF146 (SLF146Q) /CSM/SL/SLF1-B/SLF146Q.Seq.d/                        196   3e-49
VSD377 (VSD377Q) /CSM/VS/VSD3-D/VSD377Q.Seq.d/                         46   7e-04
VHL770 (VHL770Q) /CSM/VH/VHL7-C/VHL770Q.Seq.d/                         42   0.010
VFH671 (VFH671Q) /CSM/VF/VFH6-C/VFH671Q.Seq.d/                         42   0.010
SSM206 (SSM206Q) /CSM/SS/SSM2-A/SSM206Q.Seq.d/                         40   0.041
VSI103 (VSI103Q) /CSM/VS/VSI1-A/VSI103Q.Seq.d/                         38   0.16
VSH817 (VSH817Q) /CSM/VS/VSH8-A/VSH817Q.Seq.d/                         38   0.16
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                         38   0.16
VHO815 (VHO815Q) /CSM/VH/VHO8-A/VHO815Q.Seq.d/                         38   0.16

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  0.001  7
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    38  0.004  8
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34  0.004  8
AX348777|AX348777.1 Sequence 235 from Patent WO0202807.           34  0.004  4
AX252004|AX252004.1 Sequence 265 from Patent WO0168911.           34  0.004  4
BI323284|BI323284.1 kt69c06.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5', mRNA sequence.    38  0.005  3
AX344572|AX344572.1 Sequence 23 from Patent WO0200932.            36  0.005  9
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36  0.014  10
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          38  0.015  9
BX510306|BX510306.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-195F19.    44  0.018  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_12(AC117081|pid:none) Dictyostelium discoideum chromoso...    39   0.096
(Q8I1U7) RecName: Full=Structural maintenance of chromosomes pro...    38   0.21
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.3
AC116925_14(AC116925|pid:none) Dictyostelium discoideum chromoso...    33   6.9
CU640366_11(CU640366|pid:none) Podospora anserina genomic DNA ch...    33   9.0
AE000783_795(AE000783|pid:none) Borrelia burgdorferi B31, comple...    33   9.0
AE014188_214(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.0

 psg: 0.63  gvh: 0.20  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.09
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for AFJ783 is nuc

>AFJ783F.Seq
CTTGTATATAAATTTTAAACAACAAAAATTTCAATTAATAATTTTTTTTATATATAAAAT
TTAACTCAAACATTAATAAAATGAATAACACACATTACACCGATAACAAGAGAGTTGTTG
TAAATAATAATAATCAACATAACCATAATCATAACCATAATAATAATAATAATAATAACA
ACAATAATAACAAAAGAGCTCCTTTATCAAATACACCAAAAAAACCCGTTTTCCAAGATG
CCGTCGTAGCCAAGTCAGATGTTGGTGAATTTCAAGGTGGTTACTTTATAATGTCTCCAA
ACGAAAATGAAAAAATAAAGAAACCAATTTCTCAAAGCAAATACTCACCACAAAGGAAGA
GATTACCAAATGTTAACCAATTAAATAATAATAGTGAAGAAACCAATATGGATATGAAAG
CTTTAAAACAACAACAACAACAACAATATATGCAAATTAAAAATAGACATCAACAATATC
ATCAACAATTCCAACAACAAAATCAACAACAACAAAATGATATTAGTATACTTCTAACAC
CTTTAATTAAAGAAACAAATTTAAATAATGATAATAATTTTTCACCAAAAAAATTAAATA
CATCAAATAACAAAATAAACACACCACCAAGATCAACTTCGCCA----------