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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL331
Library SH
(Link to library)
Clone ID SHL331
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11354-1|Contig-U13304-1
Original site URL
Representative seq. ID SHL331P
(Link to Original site)
Representative DNA sequence 
>SHL331 (SHL331Q) /CSM/SH/SHL3-B/SHL331Q.Seq.d/
AATTTATTAATTTTGTGTTTTCAAATAGATATCTTAAAAAAGTAATACTCAATAGTGATA
TTTTATATACATTACCTTCAACTGTAAAGAAATTACATTTGGAAAGATGCACTGGTTTAA
CCAATGTAACTCAAAAATTACCGCCATATGATTATTTAGAGATAATTACCTTTTCATCAG
ATACTTTCATATTTTATATGTCATGGATTCAAAATATTAAAGAGTTTTATTTTTATAATG
TTGAATTTCCATATACTTTAAATACAACTTTTGTTACAGATTTTGAAAATATTGAAAATT
ATACCAGACTAGATTACATGGGCTTCTCAACAAATGAAATACCTGATCTTACTGGTTTTT
CATGTGGTGTTGATATGCTTTTAGGTTTTGCTTTTAAAAGTTCATTTGAGAAATTATTAA
CATTTAGTGGTGTTAAAGATATGATGATTTGGTACTATACAAGACCAATAGATATACCAA
CACGATTATTACAATTAAGTGGAATGCAAAATTTGCAAATTAATATAAATTTTAAAGTAC
CATCTTATCAATATGATTTCTCAAATTTAACATCATTATCAATGCTTCAACTTATGGATA
AXXXXXXXXXXTGGTAGCGAAATTAGAAAATTCACATTACCAATTGTTAAACAAGCACCT
GTACCTGCAAATATTACTTACAGTGGTATTGCATCGAATCAAGTCGAAATAAATGGTGAA
TTCTTTACATACAACATTACAGATGTTTCGGTTTTAGTAAGTGGTAATGATTGTCTTGTA
ACTTATACAACATTCAACCAAATCAAATGTACATTAACAAAAGGTTTAAATGAAAGTATT
GTATTACCAGTTGATTTTATTTTTGTTGACATTATTGTAGGTGGAAACAAAACAAGTGTT
TATGTTAGATTACAAGAAACATCATATATAAACAATAAAAAGTGTAACCCTGAACTATGT
ACTTCCAATACATATTGTAATTTAAATGATGGAATTTGCTATCCACATTTAGATTGTATT
TCAGATTGTACAATAAACAANGCAGTTTGTAATCATGTTAGTGGNNNGTGTGATTGTAGG
AATAATNTGTAGTAATGCAGGTTTATGCAATGGNGTAGATGGTNCTTGTTCGTGTAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
FINFVFSNRYLKKVILNSDILYTLPSTVKKLHLERCTGLTNVTQKLPPYDYLEIITFSSD
TFIFYMSWIQNIKEFYFYNVEFPYTLNTTFVTDFENIENYTRLDYMGFSTNEIPDLTGFS
CGVDMLLGFAFKSSFEKLLTFSGVKDMMIWYYTRPIDIPTRLLQLSGMQNLQININFKVP
SYQYDFSNLTSLSMLQLMD---

---GSEIRKFTLPIVKQAPVPANITYSGIASNQVEINGEFFTYNITDVSVLVSGNDCLVT
YTTFNQIKCTLTKGLNESIVLPVDFIFVDIIVGGNKTSVYVRLQETSYINNKKCNPELCT
SNTYCNLNDGICYPHLDCISDCTINXAVCNHVSGXCDCRNNX**crfmqwxrwxlfv*
Translated Amino Acid sequence (All Frames) 
Frame A:
nllilcfqidilkk*ysivifyihylql*rnyiwkdalv*pm*lknyrhmii*r*lpfhq
ilsyfichgfkilksfifimlnfhil*iqlllqilkilkiipd*itwasqqmkylillvf
hvvlicf*vlllkvhlrny*hlvvlki**fgtiqdq*iyqhdyyn*veckickli*ilky
hlinmisqi*hhyqcfnlwi---

---w*rn*kihitnc*tstctckyylqwyciessrnkw*ilyiqhyrcfgfskw**lscn
lyniqpnqmyinkrfk*kycits*fyfc*hycrwkqnkclc*itrniiykq*kv*p*tmy
fqyil*fk*wnllstfrlyfrlynkqxsl*sc*wxv*l*e*xvvmqvyamx*mvlvrv

Frame B:
iy*fcvfk*is*ksntq**yfiyitfnckeitfgkmhwfnqcnskitai*lfrdnylfir
yfhilyvmdsky*rvlfl*c*isiyfkynfcyrf*ky*klyqtrlhgllnk*nt*sywff
mwc*yafrfcf*kfi*eiini*wc*ryddlvlyktnrytntiitikwnakfan*ykf*st
ilsi*flkfniiinastyg*---

---GSEIRKFTLPIVKQAPVPANITYSGIASNQVEINGEFFTYNITDVSVLVSGNDCLVT
YTTFNQIKCTLTKGLNESIVLPVDFIFVDIIVGGNKTSVYVRLQETSYINNKKCNPELCT
SNTYCNLNDGICYPHLDCISDCTINXAVCNHVSGXCDCRNNX**crfmqwxrwxlfv*

Frame C:
FINFVFSNRYLKKVILNSDILYTLPSTVKKLHLERCTGLTNVTQKLPPYDYLEIITFSSD
TFIFYMSWIQNIKEFYFYNVEFPYTLNTTFVTDFENIENYTRLDYMGFSTNEIPDLTGFS
CGVDMLLGFAFKSSFEKLLTFSGVKDMMIWYYTRPIDIPTRLLQLSGMQNLQININFKVP
SYQYDFSNLTSLSMLQLMD---

---vaklenshyqllnkhlylqilltvvlhriksk*mvnslhttlqmfrf**vvmivl*l
iqhstksnvh*qkv*mkvlyyqlilflltll*vetkqvfmldykkhhi*tiksvtlnyvl
pihivi*mmefaihi*ivfqivq*txqfvimlvxxvivgixcsnaglcngvdgxcscn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL331 (SHL331Q) /CSM/SH/SHL3-B/SHL331Q.Seq.d/                       2155   0.0
AHO161 (AHO161Q) /CSM/AH/AHO1-C/AHO161Q.Seq.d/                       1176   0.0
CHH159 (CHH159Q) /CSM/CH/CHH1-C/CHH159Q.Seq.d/                       1168   0.0
AHN374 (AHN374Q) /CSM/AH/AHN3-D/AHN374Q.Seq.d/                       1168   0.0
AHG636 (AHG636Q) /CSM/AH/AHG6-B/AHG636Q.Seq.d/                       1168   0.0
AHL205 (AHL205Q) /CSM/AH/AHL2-A/AHL205Q.Seq.d/                       1160   0.0
CHJ651 (CHJ651Q) /CSM/CH/CHJ6-C/CHJ651Q.Seq.d/                       1100   0.0
VFI823 (VFI823Q) /CSM/VF/VFI8-A/VFI823Q.Seq.d/                       1092   0.0
VFL282 (VFL282Q) /CSM/VF/VFL2-D/VFL282Q.Seq.d/                        377   e-103
VHN661 (VHN661Q) /CSM/VH/VHN6-C/VHN661Q.Seq.d/                        218   1e-55
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DY754225|DY754225.1 178932 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', mRNA sequence.    56   0.002  1
CN648635|CN648635.1 ILLUMIGEN_MCQ_31010 Katze_MMPB Macaca mulatta cDNA clone IBIUW:6421 5' similar to Bases 1 to 1032 highly similar to human BUB3 (Hs.418533), mRNA sequence.    56   0.002  1
CD767823|CD767823.1 AGENCOURT_14714642 NICHD_Rh_Test2 Macaca mulatta cDNA clone IMAGE:6973244 5', mRNA sequence.    56   0.002  1
DB570045|DB570045.1 Homo sapiens hypothalamus cDNA, RIKEN full-length enriched library, clone:H033071H17, 3' end partial sequence.    56   0.002  1
BG621228|BG621228.1 602616739F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE:4730673 5', mRNA sequence.    56   0.002  1
BG484348|BG484348.1 602504981F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE:4618269 5', mRNA sequence.    56   0.002  1
BG611744|BG611744.1 602613121F1 NIH_MGC_60 Homo sapiens cDNA clone IMAGE:4738637 5', mRNA sequence.    56   0.002  1
BG114372|BG114372.1 602285951F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE:4373364 5', mRNA sequence.    56   0.002  1
BF978145|BF978145.1 602148070F1 NIH_MGC_62 Homo sapiens cDNA clone IMAGE:4307081 5', mRNA sequence.    56   0.002  1
BF791799|BF791799.1 602252013F1 NIH_MGC_84 Homo sapiens cDNA clone IMAGE:4344290 5', mRNA sequence.    56   0.002  1
dna update 2006. 7.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    69   4e-10
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    59   7e-09
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    54   1e-05
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...    51   6e-05
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    41   7e-05
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    47   0.001
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    42   0.050
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    37   0.074
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso...    31   0.21
(P59222) RecName: Full=Scavenger receptor class F member 2; AltN...    34   0.35
protein update 2009. 5.30
PSORT 

 psg: 0.63  gvh: 0.34  alm: 0.29  top: 0.67  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHL331 is nuc
5' end seq. ID SHL331F
5' end seq. 
>SHL331F.Seq
AATTTATTAATTTTGTGTTTTCAAATAGATATCTTAAAAAAGTAATACTCAATAGTGATA
TTTTATATACATTACCTTCAACTGTAAAGAAATTACATTTGGAAAGATGCACTGGTTTAA
CCAATGTAACTCAAAAATTACCGCCATATGATTATTTAGAGATAATTACCTTTTCATCAG
ATACTTTCATATTTTATATGTCATGGATTCAAAATATTAAAGAGTTTTATTTTTATAATG
TTGAATTTCCATATACTTTAAATACAACTTTTGTTACAGATTTTGAAAATATTGAAAATT
ATACCAGACTAGATTACATGGGCTTCTCAACAAATGAAATACCTGATCTTACTGGTTTTT
CATGTGGTGTTGATATGCTTTTAGGTTTTGCTTTTAAAAGTTCATTTGAGAAATTATTAA
CATTTAGTGGTGTTAAAGATATGATGATTTGGTACTATACAAGACCAATAGATATACCAA
CACGATTATTACAATTAAGTGGAATGCAAAATTTGCAAATTAATATAAATTTTAAAGTAC
CATCTTATCAATATGATTTCTCAAATTTAACATCATTATCAATGCTTCAACTTATGGATA
ANNNNNNNNNN
Length of 5' end seq. 611
3' end seq. ID SHL331Z
3' end seq. 
>SHL331Z.Seq
NNNNNNNNNNTGGTAGCGAAATTAGAAAATTCACATTACCAATTGTTAAACAAGCACCTG
TACCTGCAAATATTACTTACAGTGGTATTGCATCGAATCAAGTCGAAATAAATGGTGAAT
TCTTTACATACAACATTACAGATGTTTCGGTTTTAGTAAGTGGTAATGATTGTCTTGTAA
CTTATACAACATTCAACCAAATCAAATGTACATTAACAAAAGGTTTAAATGAAAGTATTG
TATTACCAGTTGATTTTATTTTTGTTGACATTATTGTAGGTGGAAACAAAACAAGTGTTT
ATGTTAGATTACAAGAAACATCATATATAAACAATAAAAAGTGTAACCCTGAACTATGTA
CTTCCAATACATATTGTAATTTAAATGATGGAATTTGCTATCCACATTTAGATTGTATTT
CAGATTGTACAATAAACAANGCAGTTTGTAATCATGTTAGTGGNNNGTGTGATTGTAGGA
ATAATNTGTAGTAATGCAGGTTTATGCAATGGNGTAGATGGTNCTTGTTCGTGTAAT
Length of 3' end seq. 537
Connected seq. ID SHL331P
Connected seq. 
>SHL331P.Seq
AATTTATTAATTTTGTGTTTTCAAATAGATATCTTAAAAAAGTAATACTCAATAGTGATA
TTTTATATACATTACCTTCAACTGTAAAGAAATTACATTTGGAAAGATGCACTGGTTTAA
CCAATGTAACTCAAAAATTACCGCCATATGATTATTTAGAGATAATTACCTTTTCATCAG
ATACTTTCATATTTTATATGTCATGGATTCAAAATATTAAAGAGTTTTATTTTTATAATG
TTGAATTTCCATATACTTTAAATACAACTTTTGTTACAGATTTTGAAAATATTGAAAATT
ATACCAGACTAGATTACATGGGCTTCTCAACAAATGAAATACCTGATCTTACTGGTTTTT
CATGTGGTGTTGATATGCTTTTAGGTTTTGCTTTTAAAAGTTCATTTGAGAAATTATTAA
CATTTAGTGGTGTTAAAGATATGATGATTTGGTACTATACAAGACCAATAGATATACCAA
CACGATTATTACAATTAAGTGGAATGCAAAATTTGCAAATTAATATAAATTTTAAAGTAC
CATCTTATCAATATGATTTCTCAAATTTAACATCATTATCAATGCTTCAACTTATGGATA
A----------TGGTAGCGAAATTAGAAAATTCACATTACCAATTGTTAAACAAGCACCT
GTACCTGCAAATATTACTTACAGTGGTATTGCATCGAATCAAGTCGAAATAAATGGTGAA
TTCTTTACATACAACATTACAGATGTTTCGGTTTTAGTAAGTGGTAATGATTGTCTTGTA
ACTTATACAACATTCAACCAAATCAAATGTACATTAACAAAAGGTTTAAATGAAAGTATT
GTATTACCAGTTGATTTTATTTTTGTTGACATTATTGTAGGTGGAAACAAAACAAGTGTT
TATGTTAGATTACAAGAAACATCATATATAAACAATAAAAAGTGTAACCCTGAACTATGT
ACTTCCAATACATATTGTAATTTAAATGATGGAATTTGCTATCCACATTTAGATTGTATT
TCAGATTGTACAATAAACAANGCAGTTTGTAATCATGTTAGTGGNNNGTGTGATTGTAGG
AATAATNTGTAGTAATGCAGGTTTATGCAATGGNGTAGATGGTNCTTGTTCGTGTAAT
Length of connected seq. 1128
Full length Seq ID -
Full length Seq. -
Length of full length seq. -