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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL320
Library SH
(Link to library)
Clone ID SHL320
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHL320P
(Link to Original site)
Representative DNA sequence 
>SHL320 (SHL320Q) /CSM/SH/SHL3-A/SHL320Q.Seq.d/
AAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAA
ATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXXGAGAGA
CTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATT
GAAAGACANACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCA
AATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCA
ACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGA
AGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCA
ATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACA
ACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAA
TGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCA
ACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAA
AGCTCAACTTGAATTGGATGCCGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGA
GAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAAGNAAANTAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
nllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---ERLYEEIHNSNLNKAVQEAEEIERXTKW*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igcrig*k**tresr*efssrettis*pn*kxx*ki
Translated Amino Acid sequence (All Frames) 
Frame A:
kftik*lfflfflfkv*iieiikinikkker*kk---

---ERLYEEIHNSNLNKAVQEAEEIERXTKW*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igcrig*k**tresr*efssrettis*pn*kxx*ki

Frame B:
nllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---rdymkkfiipi*ikqfkrlkklkdxqngngspavnshkivtqmgnvenneitneqda
ieqaqhlqriengedideyeaaqhevafldeneqdaaklqnemdqlellleeneeeqfsn
knlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrqdqqkkqkiqqendavyl
sdvekaqleldaelaknnkqenqdenlvqekqqspdqikkxxkk

Frame C:
iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---eti*rns*fqfe*sssrg*rn*ktxkmvmvhll*tlirl*lkwemlkimklpmnkmp
lnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqi
kiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*
vmlkklnlnwmpnwlkiinkrikmri*fkrnnnlltklkxkxkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL320 (SHL320Q) /CSM/SH/SHL3-A/SHL320Q.Seq.d/                        753   0.0
CHF441 (CHF441Q) /CSM/CH/CHF4-B/CHF441Q.Seq.d/                        745   0.0
AHL250 (AHL250Q) /CSM/AH/AHL2-C/AHL250Q.Seq.d/                        745   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        743   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        743   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        743   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        743   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        743   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        743   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        743   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   611   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence.    44   0.26   2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.32   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.32   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.32   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.32   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.32   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.32   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.32   1
dna update 2006. 7.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   238   3e-70
AL844508_319(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.0
AL929359_9(AL929359|pid:none) Plasmodium falciparum strain 3D7, ...    35   2.0
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.0
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.0
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    33   7.5
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    33   9.8
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   9.8
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   9.8
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   9.8
protein update 2009. 5.30
PSORT 

 psg: 0.33  gvh: 0.07  alm: 0.73  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHL320 is nuc
5' end seq. ID SHL320F
5' end seq. 
>SHL320F.Seq
AAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAA
ATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 114
3' end seq. ID SHL320Z
3' end seq. 
>SHL320Z.Seq
NNNNNNNNNNGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCA
AGAGGCTGAAGAAATTGAAAGACANACAAAATGGTAATGGTTCACCTGCTGTAAACTCTC
ATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATG
CCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATG
AAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTAC
AAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAA
ATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAAC
AAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAAT
TTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACT
TGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCCGAATTGGCTAAAAATAATAAAC
AAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAA
AGNAAANTAAAAAATA
Length of 3' end seq. 676
Connected seq. ID SHL320P
Connected seq. 
>SHL320P.Seq
AAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAA
ATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------GAGAGA
CTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATT
GAAAGACANACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCA
AATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCA
ACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGA
AGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCA
ATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACA
ACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAA
TGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCA
ACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAA
AGCTCAACTTGAATTGGATGCCGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGA
GAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAAGNAAANTAAAAAATA
Length of connected seq. 770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -