NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL265
Library SH
(Link to library)
Clone ID SHL265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHL265P
(Link to Original site)
Representative DNA sequence 
>SHL265 (SHL265Q) /CSM/SH/SHL2-C/SHL265Q.Seq.d/
TTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATA
TTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGT
ATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGC
ATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAAC
TGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATA
TGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTA
CTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAAC
GGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACAT
TCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAG
TGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACC
TACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTAC
CGATATCAATGGXXXXXXXXXXCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGT
CTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACA
ACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCT
GGAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCCATCT
CCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTT
CCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCT
GGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCA
ACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCA
AATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGA
AATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAAT
GTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCA
TTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
lniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNA
LYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYY
FETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRIS
VDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDIN---

---QVMVISLIIIKQVFMTIPMLLVQLKVVVILLLQLVSITMKHLKVQFVGIMQPLETTK
RLLFIYNLFKWSYPHLQPLVNKMVLVILLQCMILLFHNIVLVEFGLI*mvmvfkmlvnlv
fqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliq
liqiqivmlsyqllimfmsllllllmlvviilmvvhwyyskkik**kn
Translated Amino Acid sequence (All Frames) 
Frame A:
fkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfrfk*kc
iv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyqskrll
l*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliytys*n*
c*fglc*ansttnsttysttysttntstiyw*crrwfiiyryqw---

---QVMVISLIIIKQVFMTIPMLLVQLKVVVILLLQLVSITMKHLKVQFVGIMQPLETTK
RLLFIYNLFKWSYPHLQPLVNKMVLVILLQCMILLFHNIVLVEFGLI*mvmvfkmlvnlv
fqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliq
liqiqivmlsyqllimfmsllllllmlvviilmvvhwyyskkik**kn

Frame B:
lniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNA
LYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYY
FETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRIS
VDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDIN---

---r*w*fl**s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlwkqlk
gyslyitssngrtpisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twy
frnhsilnlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*sn
sskyk**cflinc**clchffyff*cwwllf*wlfigiipkk*nnkki

Frame C:
*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*iqikmh
cmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkiit
lkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlylqlelv
liwvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylpism---

---gngnffdnhktglhdytnafgatkggrdiivttgfdyyeafegsirwynatsgnn*k
vtlyi*plqmvvppsptfgkqnglgditsvydsslpqyrvgrvwldingngiqdagepgi
sgitvfliygqqstptsqtvsdsngyfkfevdfssnyycvipvaffqagssitmrnadpt
hpntnsdaflstvdnvyvtsftssdaggyyfngcslvlfqknkiikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL265 (SHL265Q) /CSM/SH/SHL2-C/SHL265Q.Seq.d/                       2395   0.0
SHL873 (SHL873Q) /CSM/SH/SHL8-D/SHL873Q.Seq.d/                       1261   0.0
SHL749 (SHL749Q) /CSM/SH/SHL7-C/SHL749Q.Seq.d/                       1261   0.0
SHL724 (SHL724Q) /CSM/SH/SHL7-A/SHL724Q.Seq.d/                       1261   0.0
SHL693 (SHL693Q) /CSM/SH/SHL6-D/SHL693Q.Seq.d/                       1261   0.0
SHL487 (SHL487Q) /CSM/SH/SHL4-D/SHL487Q.Seq.d/                       1261   0.0
SHL441 (SHL441Q) /CSM/SH/SHL4-B/SHL441Q.Seq.d/                       1261   0.0
SHL440 (SHL440Q) /CSM/SH/SHL4-B/SHL440Q.Seq.d/                       1261   0.0
SHL417 (SHL417Q) /CSM/SH/SHL4-A/SHL417Q.Seq.d/                       1261   0.0
SHL266 (SHL266Q) /CSM/SH/SHL2-C/SHL266Q.Seq.d/                       1261   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    62   4e-05  1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds.    62   4e-05  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    62   4e-05  1
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   4e-05  3
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    32   6e-04  3
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    58   6e-04  1
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt].    58   6e-04  1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    58   6e-04  1
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   0.002  3
DT775356|DT775356.1 124719991 TH1 Tribolium castaneum cDNA clone 3C7 3', mRNA sequence.    54   0.009  1
dna update 2006. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    61   8e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   4e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   4e-07
AY458641_15(AY458641|pid:none) Uncultured marine bacterium 463 c...    51   1e-04
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    51   1e-04
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    50   2e-04
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei...    50   2e-04
CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,...    49   3e-04
CP000239_181(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp...    49   5e-04
protein update 2009. 5.30
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.21  top: 0.40  tms: 0.27  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SHL265 is end
5' end seq. ID SHL265F
5' end seq. 
>SHL265F.Seq
TTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATA
TTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGT
ATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGC
ATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAAC
TGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATA
TGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTA
CTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAAC
GGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACAT
TCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAG
TGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACC
TACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTAC
CGATATCAATGGNNNNNNNNNN
Length of 5' end seq. 682
3' end seq. ID SHL265Z
3' end seq. 
>SHL265Z.Seq
NNNNNNNNNNCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTAT
ACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGAT
TACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGAAACAACTAA
AAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCCATCTCCAACCTTTGGT
AAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGT
GTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGT
ATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACT
GTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGT
GTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCA
ACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACT
TCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTGGTATTATTC
CAAAAAAATAAAATAATAAAAAAATA
Length of 3' end seq. 686
Connected seq. ID SHL265P
Connected seq. 
>SHL265P.Seq
TTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATA
TTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGT
ATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGC
ATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAAC
TGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATA
TGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTA
CTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAAC
GGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACAT
TCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAG
TGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACC
TACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTAC
CGATATCAATGG----------CAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGT
CTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACA
ACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCT
GGAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCCATCT
CCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTT
CCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCT
GGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCA
ACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCA
AATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGA
AATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAAT
GTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCA
TTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATA
Length of connected seq. 1348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -