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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL264
Library SH
(Link to library)
Clone ID SHL264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11114-1
Original site URL
Representative seq. ID SHL264P
(Link to Original site)
Representative DNA sequence 
>SHL264 (SHL264Q) /CSM/SH/SHL2-C/SHL264Q.Seq.d/
ATTTTTTATTTAATTTTATCACAAAGGTCCATTTTAAAAATGGGTTTAGCAGGAGATTCA
CCATATGATTTTGGAGAAATTAAACCAGATGATTTAGATAAATCAATTACAAAATTTCAA
AATATTTTATCAAATTGTATTAAAGATTTAGAAACTGATGGAGAAGAAATAATAAAATTA
GTGAAAACATTAATTTTAACTCAATCACCAGGTGAAAGAACTACAGAATTCATAGAGGAA
TATTTGAAAAAGATTAGCAATCTAAGTAATACGGAAGCATTGAATGTATCAAGAGTGTTA
TCACATCTATTGAATTTAATTAATGTTGCAGAACAACATCATTTGGTTAGATCAGTTAGA
GAATCATTCCTCAACAATGAAGATGATTTAAAGTATTCATGTGAGAATACCATTCAACAA
TTATTAAATCAAGGTCTTGACAAGGAGAGTGTTTACAATGCATTAATTCAACAAAAGATC
GAACTTGTTTTAACGGCACATCCAACACAAATTATGAGACGTACTATAATTTCCAAGAAT
TCGGCAATGGGTGAAGCATTATCGTCATTGGATAATCAGCAATTGACAATGTTTGAACGT
GAAGXXXXXXXXXXTCTTGTAAAAAGTATAGATCAGTCGTAAGAGAGAATCCATCATTCA
TTCAATACTTTAGAACTTCAACCAGTCCAACCTGAAATGGTCTACCTTAACATTGGTTCT
CGTCCTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAACATTTACGTGCTATTCCT
TGGGTATTCAGTTTTTCACAAAATAGATTAAATTTACCAGTTTGGTTAGGTATTGAAGAT
GCAATTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATCAATGAAATGTACAAAGAA
TGGCCATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAACTGATCCT
CAAATTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTTTAGGTATT
GAAATGATTGATGAACTCACAAAAACTACAAATGCAATCTTGGAATTAACAAAACATAAA
ACTCTTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAACCTTTATG
GATCCAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTCAAAAACCA
GATGGAACAAATGATGATGCTGATCCAATATTAATTGATACTTTAATTATTACTTTTAAT
GGTATTTCTGCGGTANAAAACTAC
sequence update 2002.10.25
Translated Amino Acid sequence 
IFYLILSQRSILKMGLAGDSPYDFGEIKPDDLDKSITKFQNILSNCIKDLETDGEEIIKL
VKTLILTQSPGERTTEFIEEYLKKISNLSNTEALNVSRVLSHLLNLINVAEQHHLVRSVR
ESFLNNEDDLKYSCENTIQQLLNQGLDKESVYNALIQQKIELVLTAHPTQIMRRTIISKN
SAMGEALSSLDNQQLTMFERE---

---SCKKYRSVVRENPSFIQYFRTSTSPT*nglp*hwfsscqknsrkiiwigtftcyslg
iqfftk*ikftslvry*rcnfrgknkrmgi*yq*nvqrmailfihy*fgrdgtlen*ssn
fitlqsnvstsssstfry*nd**thknykcnlginkt*nsstr**npstfcfns*nlygs
nqlyss*np*ktsfnsktrwnk**c*snin*yfnyyf*wyfcgxkl
Translated Amino Acid sequence (All Frames) 
Frame A:
IFYLILSQRSILKMGLAGDSPYDFGEIKPDDLDKSITKFQNILSNCIKDLETDGEEIIKL
VKTLILTQSPGERTTEFIEEYLKKISNLSNTEALNVSRVLSHLLNLINVAEQHHLVRSVR
ESFLNNEDDLKYSCENTIQQLLNQGLDKESVYNALIQQKIELVLTAHPTQIMRRTIISKN
SAMGEALSSLDNQQLTMFERE---

---SCKKYRSVVRENPSFIQYFRTSTSPT*nglp*hwfsscqknsrkiiwigtftcyslg
iqfftk*ikftslvry*rcnfrgknkrmgi*yq*nvqrmailfihy*fgrdgtlen*ssn
fitlqsnvstsssstfry*nd**thknykcnlginkt*nsstr**npstfcfns*nlygs
nqlyss*np*ktsfnsktrwnk**c*snin*yfnyyf*wyfcgxkl

Frame B:
ffi*fyhkgpf*kwv*qeihhmileklnqmi*inqlqnfkifyqivlki*klmekk**n*
*kh*f*lnhqvkelqns*rni*krlai*virkh*myqecyhiy*i*lmlqnniiwldqle
nhsstmkmi*sihvripfnny*ikvltrrvftmh*fnkrsnlf*rhiqhkl*dvl*fpri
rqwvkhyrhwiisn*qclnvk---

---lvksidqs*erihhsfntlelqpvqpemvylnigsrpakriaaksfglehlraipwv
fsfsqnrlnlpvwlgiedaileaktkgwgsdinemykewpffsstidlvemvllktdpqi
slrynqmlvpaqvqplgiemideltkttnaileltkhktlqqdnkilqhfvsirrtfmdp
inyiqvetlkrlrstqkpdgtnddadpilidtliitfngisavxny

Frame C:
flfnfitkvhfkngfsrrfti*fwrn*tr*fr*inykiskyfikly*rfrn*wrrnnkis
eninfnsitr*knyrihrgifekd*qsk*ygsieciksvitsiefn*ccrttsfg*is*r
iipqq*r*fkvfm*eyhstiiksrs*qgeclqcinstkdrtcfngtsntnyetyynfqef
gng*siivig*saidnv*t*---

---l*kv*isrkresiihsil*nfnqsnlkwstltlvlvlpke*pqnhldwniyvlflgy
svfhkid*iyqfg*vlkmqf*rqkqkdgdlismkctknghsfhplliw*rwys*klilkf
hyvtikc*yqlkfnl*vlk*lmnsqklqmqswn*qniklfnkiiksfnilfqfveplwiq
siifklkplkdfvqlknqmeqmmmliqy*lil*llllmvflrxkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL264 (SHL264Q) /CSM/SH/SHL2-C/SHL264Q.Seq.d/                       2480   0.0
VHB884 (VHB884Q) /CSM/VH/VHB8-D/VHB884Q.Seq.d/                       1285   0.0
AHD621 (AHD621Q) /CSM/AH/AHD6-A/AHD621Q.Seq.d/                       1285   0.0
AHI865 (AHI865Q) /CSM/AH/AHI8-C/AHI865Q.Seq.d/                       1281   0.0
AHF196 (AHF196Q) /CSM/AH/AHF1-D/AHF196Q.Seq.d/                       1275   0.0
SHB261 (SHB261Q) /CSM/SH/SHB2-C/SHB261Q.Seq.d/                       1255   0.0
VHP752 (VHP752Q) /CSM/VH/VHP7-C/VHP752Q.Seq.d/                       1253   0.0
VHI520 (VHI520Q) /CSM/VH/VHI5-A/VHI520Q.Seq.d/                       1227   0.0
VHL105 (VHL105Q) /CSM/VH/VHL1-A/VHL105Q.Seq.d/                       1211   0.0
AHK354 (AHK354Q) /CSM/AH/AHK3-C/AHK354Q.Seq.d/                       1197   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DQ538352|DQ538352.1 Bienertia sinuspersici phosphoenolpyruvate carboxylase mRNA, complete cds.    48   2e-07  2
DQ538353|DQ538353.1 Suaeda aralocaspica phosphoenolpyruvate carboxylase mRNA, partial cds.    48   2e-07  2
DQ538354|DQ538354.1 Suaeda eltonica phosphoenolpyruvate carboxylase mRNA, partial cds.    40   3e-05  2
CJ768150|CJ768150.1 Ipomoea nil cDNA clone:jmsf51j06, 3' end.      46   1e-04  2
BJ573459|BJ573459.1 Ipomoea nil cDNA clone:jm23o22, 3' end, single read.    46   1e-04  2
BJ572016|BJ572016.1 Ipomoea nil cDNA clone:jm19g15, 3' end, single read.    46   1e-04  2
AI781699|AI781699.1 EST262578 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES16H4, mRNA sequence.    38   5e-04  2
CO911440|CO911440.1 BJ03019B12 BJ03 Capsicum annuum cDNA 5', mRNA sequence.    56   0.002  1
E03014|E03014.1 DNA encoding phosphoenolpyruvic acid carboxylase(PEPC).    56   0.002  1
X59016|X59016.1 N.tabacum mRNA for phosphoenolpyruvate carboxylase.    56   0.002  1
dna update 2006. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB830099_1(FB830099|pid:none) Sequence 49372 from Patent WO20080...   165   3e-43
EF634318_1(EF634318|pid:none) Ricinus communis phosphoenolpyruva...   166   4e-43
AC011914_12(AC011914|pid:none) Arabidopsis thaliana chromosome 1...   162   7e-42
AC008075_1(AC008075|pid:none) Arabidopsis thaliana chromosome 1 ...   162   7e-42
AM424873_1(AM424873|pid:none) Vitis vinifera contig VV78X088960....   162   2e-40
BT070413_1(BT070413|pid:none) Picea sitchensis clone WS02727_O18...   159   1e-39
AJ231278_1(AJ231278|pid:none) Anthoceros punctatus partial mRNA ...   159   9e-39
(Q6R2V6) RecName: Full=Phosphoenolpyruvate carboxylase 2;       ...   161   5e-38
CP000949_4086(CP000949|pid:none) Pseudomonas putida W619, comple...   142   2e-37
(A5W881) RecName: Full=Phosphoenolpyruvate carboxylase;         ...   142   6e-37
protein update 2009. 5.30
PSORT 

 psg: 0.82  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHL264 is cyt
5' end seq. ID SHL264F
5' end seq. 
>SHL264F.Seq
ATTTTTTATTTAATTTTATCACAAAGGTCCATTTTAAAAATGGGTTTAGCAGGAGATTCA
CCATATGATTTTGGAGAAATTAAACCAGATGATTTAGATAAATCAATTACAAAATTTCAA
AATATTTTATCAAATTGTATTAAAGATTTAGAAACTGATGGAGAAGAAATAATAAAATTA
GTGAAAACATTAATTTTAACTCAATCACCAGGTGAAAGAACTACAGAATTCATAGAGGAA
TATTTGAAAAAGATTAGCAATCTAAGTAATACGGAAGCATTGAATGTATCAAGAGTGTTA
TCACATCTATTGAATTTAATTAATGTTGCAGAACAACATCATTTGGTTAGATCAGTTAGA
GAATCATTCCTCAACAATGAAGATGATTTAAAGTATTCATGTGAGAATACCATTCAACAA
TTATTAAATCAAGGTCTTGACAAGGAGAGTGTTTACAATGCATTAATTCAACAAAAGATC
GAACTTGTTTTAACGGCACATCCAACACAAATTATGAGACGTACTATAATTTCCAAGAAT
TCGGCAATGGGTGAAGCATTATCGTCATTGGATAATCAGCAATTGACAATGTTTGAACGT
GAAGNNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID SHL264Z
3' end seq. 
>SHL264Z.Seq
NNNNNNNNNNTCTTGTAAAAAGTATAGATCAGTCGTAAGAGAGAATCCATCATTCATTCA
ATACTTTAGAACTTCAACCAGTCCAACCTGAAATGGTCTACCTTAACATTGGTTCTCGTC
CTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAACATTTACGTGCTATTCCTTGGG
TATTCAGTTTTTCACAAAATAGATTAAATTTACCAGTTTGGTTAGGTATTGAAGATGCAA
TTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATCAATGAAATGTACAAAGAATGGC
CATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAACTGATCCTCAAA
TTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTTTAGGTATTGAAA
TGATTGATGAACTCACAAAAACTACAAATGCAATCTTGGAATTAACAAAACATAAAACTC
TTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAACCTTTATGGATC
CAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTCAAAAACCAGATG
GAACAAATGATGATGCTGATCCAATATTAATTGATACTTTAATTATTACTTTTAATGGTA
TTTCTGCGGTANAAAACTAC
Length of 3' end seq. 680
Connected seq. ID SHL264P
Connected seq. 
>SHL264P.Seq
ATTTTTTATTTAATTTTATCACAAAGGTCCATTTTAAAAATGGGTTTAGCAGGAGATTCA
CCATATGATTTTGGAGAAATTAAACCAGATGATTTAGATAAATCAATTACAAAATTTCAA
AATATTTTATCAAATTGTATTAAAGATTTAGAAACTGATGGAGAAGAAATAATAAAATTA
GTGAAAACATTAATTTTAACTCAATCACCAGGTGAAAGAACTACAGAATTCATAGAGGAA
TATTTGAAAAAGATTAGCAATCTAAGTAATACGGAAGCATTGAATGTATCAAGAGTGTTA
TCACATCTATTGAATTTAATTAATGTTGCAGAACAACATCATTTGGTTAGATCAGTTAGA
GAATCATTCCTCAACAATGAAGATGATTTAAAGTATTCATGTGAGAATACCATTCAACAA
TTATTAAATCAAGGTCTTGACAAGGAGAGTGTTTACAATGCATTAATTCAACAAAAGATC
GAACTTGTTTTAACGGCACATCCAACACAAATTATGAGACGTACTATAATTTCCAAGAAT
TCGGCAATGGGTGAAGCATTATCGTCATTGGATAATCAGCAATTGACAATGTTTGAACGT
GAAG----------TCTTGTAAAAAGTATAGATCAGTCGTAAGAGAGAATCCATCATTCA
TTCAATACTTTAGAACTTCAACCAGTCCAACCTGAAATGGTCTACCTTAACATTGGTTCT
CGTCCTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAACATTTACGTGCTATTCCT
TGGGTATTCAGTTTTTCACAAAATAGATTAAATTTACCAGTTTGGTTAGGTATTGAAGAT
GCAATTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATCAATGAAATGTACAAAGAA
TGGCCATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAACTGATCCT
CAAATTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTTTAGGTATT
GAAATGATTGATGAACTCACAAAAACTACAAATGCAATCTTGGAATTAACAAAACATAAA
ACTCTTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAACCTTTATG
GATCCAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTCAAAAACCA
GATGGAACAAATGATGATGCTGATCCAATATTAATTGATACTTTAATTATTACTTTTAAT
GGTATTTCTGCGGTANAAAACTAC
Length of connected seq. 1274
Full length Seq ID -
Full length Seq. -
Length of full length seq. -